Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 21 229 NP_671714 21 229 XP_006715890 21 229 XP_005250160 21 229 XP_005250159 21 229 NP_061136 19 665 XP_006724827 19 665 XP_005276776 17 3301 XP_005262564 17 3301 XP_006710324 17 3301 NP_001276091 16 5631 XP_006721364 16 5631 NP_001276092 16 5631 NP_115645 16 5631 NP_001116434 16 7355 XP_005260765 16 7355 NP_003963 15 9605 XP_005270323 15 9605 XP_005270322 15 9605>NP_005742 Length = 3907 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMSTQDQH Sbjct: 2270 AMSTQDQH 2277>NP_671714 Length = 3899 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMSTQDQH Sbjct: 2262 AMSTQDQH 2269>XP_006715890 Length = 3860 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMSTQDQH Sbjct: 2223 AMSTQDQH 2230>XP_005250160 Length = 3939 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMSTQDQH Sbjct: 2302 AMSTQDQH 2309>XP_005250159 Length = 3952 Score = 20.8 bits (42), Expect = 229 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMSTQDQH Sbjct: 2315 AMSTQDQH 2322>NP_061136 Length = 904 Score = 19.2 bits (38), Expect = 665 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQH Sbjct: 380 AMSTRDQH 387Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQ+ Sbjct: 568 AMSTRDQY 575Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 +MST+DQ+ Sbjct: 615 SMSTRDQY 622Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AMSTQDQH 9 +MST+D H Sbjct: 145 SMSTRDLH 152Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSTQDQH 9 MST+DQ+ Sbjct: 428 MSTRDQY 434>XP_006724827 Length = 904 Score = 19.2 bits (38), Expect = 665 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQH Sbjct: 380 AMSTRDQH 387Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQ+ Sbjct: 568 AMSTRDQY 575Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 +MST+DQ+ Sbjct: 615 SMSTRDQY 622Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 AMSTQDQH 9 +MST+D H Sbjct: 145 SMSTRDLH 152Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSTQDQH 9 MST+DQ+ Sbjct: 428 MSTRDQY 434>XP_005276776 Length = 991 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQ+ Sbjct: 862 AMSTRDQY 869Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 +MST+DQ+ Sbjct: 909 SMSTRDQY 916>XP_005262564 Length = 991 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQ+ Sbjct: 862 AMSTRDQY 869Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 +MST+DQ+ Sbjct: 909 SMSTRDQY 916>XP_006710324 Length = 943 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 AMST+DQ+ Sbjct: 814 AMSTRDQY 821Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AMSTQDQH 9 +MST+DQ+ Sbjct: 861 SMSTRDQY 868>NP_001276091 Length = 874 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 STQDQH 9 STQD+H Sbjct: 329 STQDEH 334>XP_006721364 Length = 831 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 STQDQH 9 STQD+H Sbjct: 329 STQDEH 334>NP_001276092 Length = 809 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 STQDQH 9 STQD+H Sbjct: 264 STQDEH 269>NP_115645 Length = 874 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 STQDQH 9 STQD+H Sbjct: 329 STQDEH 334>NP_001116434 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VAMSTQDQ 8 V +STQDQ Sbjct: 74 VKVSTQDQ 81>XP_005260765 Length = 348 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 VAMSTQDQ 8 V +STQDQ Sbjct: 74 VKVSTQDQ 81>NP_003963 Length = 1849 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSTQDQH 9 +STQDQ+ Sbjct: 545 LSTQDQN 551>XP_005270323 Length = 1519 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSTQDQH 9 +STQDQ+ Sbjct: 215 LSTQDQN 221>XP_005270322 Length = 1646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSTQDQH 9 +STQDQ+ Sbjct: 342 LSTQDQN 348Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.109 0.288 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 408,649 Number of extensions: 336 Number of successful extensions: 30 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |