Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 17 2528 NP_001087241 17 2528 XP_005265799 17 2528 XP_005265798 17 2528 XP_005265797 17 2528 XP_006724409 17 4312 XP_005261851 17 4312 XP_005261850 17 4312 NP_001138678 17 4312 NP_055928 16 5631 XP_005256618 16 5631 XP_005256617 16 5631 NP_001177 16 7355 NP_996749 16 7355 NP_653267 16 7355 NP_689835 16 7355 XP_006726450 16 7355 XP_006724097 16 7355 XP_005261071 16 7355 XP_005261070 16 7355 XP_005261069 16 7355 XP_006717373 16 7355 XP_005248505 16 7355 XP_005265662 16 7355 XP_006712223 16 7355 XP_006710190 16 7355 NP_001239 16 7355 NP_001004106 15 9605 NP_001004105 15 9605 NP_002073 15 9605 NP_005290 15 9605 NP_002244 15 9605 NP_001726 15 9605 NP_006019 15 9605 NP_060004 15 9605 NP_808211 15 9605 NP_803545 15 9605 NP_001093582 15 9605 NP_005631 15 9605 NP_003703 15 9605 NP_005289 15 9605 XP_005258397 15 9605 XP_005258396 15 9605 XP_006722591 15 9605 XP_006714922 15 9605 XP_006714921 15 9605 NP_001129386 15 9605 NP_060918 15 9605>NP_000213 Length = 976 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 VAK MAFLA Sbjct: 776 VAKGMAFLA 784>NP_001087241 Length = 972 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 VAK MAFLA Sbjct: 772 VAKGMAFLA 780>XP_005265799 Length = 973 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 VAK MAFLA Sbjct: 773 VAKGMAFLA 781>XP_005265798 Length = 976 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 VAK MAFLA Sbjct: 776 VAKGMAFLA 784>XP_005265797 Length = 977 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 VAK MAFLA Sbjct: 777 VAKGMAFLA 785>XP_006724409 Length = 1806 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 VAKC +LA Sbjct: 1338 VAKCQNYLA 1346>XP_005261851 Length = 1806 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 VAKC +LA Sbjct: 1338 VAKCQNYLA 1346>XP_005261850 Length = 1806 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 VAKC +LA Sbjct: 1338 VAKCQNYLA 1346>NP_001138678 Length = 1806 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 VAKC +LA Sbjct: 1338 VAKCQNYLA 1346>NP_055928 Length = 2961 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VAKCMAFL 8 VAKC A++ Sbjct: 249 VAKCYAYI 256>XP_005256618 Length = 2962 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VAKCMAFL 8 VAKC A++ Sbjct: 249 VAKCYAYI 256>XP_005256617 Length = 2966 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VAKCMAFL 8 VAKC A++ Sbjct: 249 VAKCYAYI 256>NP_001177 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 V KC+ FL+ Sbjct: 106 VCKCVEFLS 114>NP_996749 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 V KC+ FL+ Sbjct: 106 VCKCVEFLS 114>NP_653267 Length = 4753 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 KCMAF 7 KCMAF Sbjct: 1036 KCMAF 1040>NP_689835 Length = 549 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VAKCMAF 7 VA+C+AF Sbjct: 313 VAECVAF 319>XP_006726450 Length = 661 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 +++CM FLA Sbjct: 38 LSQCMYFLA 46>XP_006724097 Length = 623 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 V KC+ FL+ Sbjct: 106 VCKCVEFLS 114>XP_005261071 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 V KC+ FL+ Sbjct: 106 VCKCVEFLS 114>XP_005261070 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 V KC+ FL+ Sbjct: 106 VCKCVEFLS 114>XP_005261069 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 V KC+ FL+ Sbjct: 106 VCKCVEFLS 114>XP_006717373 Length = 1087 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CMAFLA 9 C+AFLA Sbjct: 6 CLAFLA 11>XP_005248505 Length = 550 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 VAKCMAF 7 VA+C+AF Sbjct: 314 VAECVAF 320>XP_005265662 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CMAFLA 9 C+AFLA Sbjct: 501 CLAFLA 506>XP_006712223 Length = 661 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 +++CM FLA Sbjct: 38 LSQCMYFLA 46>XP_006710190 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAKCMAFLA 9 +++CM FLA Sbjct: 38 LSQCMYFLA 46>NP_001239 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 CMAFLA 9 C+AFLA Sbjct: 501 CLAFLA 506>NP_001004106 Length = 576 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VAKCMAFL 8 +++C+AFL Sbjct: 77 LSRCVAFL 84>NP_001004105 Length = 560 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VAKCMAFL 8 +++C+AFL Sbjct: 77 LSRCVAFL 84>NP_002073 Length = 589 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VAKCMAFL 8 +++C+AFL Sbjct: 77 LSRCVAFL 84>NP_005290 Length = 319 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 +A C+ FLA Sbjct: 63 LAACLPFLA 71>NP_002244 Length = 1356 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VAKCMAFLA 9 VAK M FLA Sbjct: 1012 VAKGMEFLA 1020>NP_001726 Length = 1676 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AKCMAFLA 9 + C AFLA Sbjct: 1655 SSCQAFLA 1662>NP_006019 Length = 441 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 CMAFL 8 CMAFL Sbjct: 309 CMAFL 313>NP_060004 Length = 1941 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AKCMAFLA 9 A+C FLA Sbjct: 796 ARCRGFLA 803>NP_808211 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CMAFLA 9 CM FLA Sbjct: 196 CMVFLA 201>NP_803545 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CMAFLA 9 CM FLA Sbjct: 119 CMVFLA 124>NP_001093582 Length = 1941 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 AKCMAFLA 9 A+C FLA Sbjct: 796 ARCRGFLA 803>NP_005631 Length = 862 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VAKCMAFLA 9 V KC FLA Sbjct: 259 VKKCKNFLA 267>NP_003703 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CMAFLA 9 CM FLA Sbjct: 175 CMVFLA 180>NP_005289 Length = 361 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 VAKCMAFL 8 +A C+AF+ Sbjct: 291 IATCLAFV 298>XP_005258397 Length = 618 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VAKCMAFLA 9 V KC FLA Sbjct: 259 VKKCKNFLA 267>XP_005258396 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VAKCMAFLA 9 V KC FLA Sbjct: 259 VKKCKNFLA 267>XP_006722591 Length = 827 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 VAKCMAFLA 9 V KC FLA Sbjct: 259 VKKCKNFLA 267>XP_006714922 Length = 557 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VAKCMAFL 8 +++C+AFL Sbjct: 45 LSRCVAFL 52>XP_006714921 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 VAKCMAFL 8 +++C+AFL Sbjct: 47 LSRCVAFL 54>NP_001129386 Length = 1503 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 2 AKCMAF 7 A CMAF Sbjct: 1148 ASCMAF 1153>NP_060918 Length = 1230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 VAKCMAFL 8 +AKC+A L Sbjct: 799 IAKCVAAL 806Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.135 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 507,438 Number of extensions: 525 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |