Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 18 1482 NP_004439 18 1482 NP_001276865 18 1482 NP_001005862 18 1482 XP_005257197 18 1482 XP_006721828 18 1482 NP_001273538 17 3301 NP_115507 17 3301 XP_006715637 17 3301 XP_005267214 17 3301 XP_005267213 17 3301 XP_006715636 17 3301 XP_005267212 17 3301 XP_005267211 17 3301 NP_001035519 16 5631 NP_056157 16 5631 XP_005266415 16 5631 XP_005266414 16 5631 NP_001171809 16 7355 NP_001098713 16 7355 NP_065817 16 7355 NP_065681 15 9605 NP_066124 15 9605 NP_057460 15 9605 NP_001265393 15 9605 NP_036192 15 9605 NP_005681 15 9605 NP_036193 15 9605 NP_001265392 15 9605 NP_001265394 15 9605 NP_001244928 15 9605 NP_036442 15 9605 NP_003904 15 9605 NP_002908 15 9605 XP_006721607 15 9605 XP_005256736 15 9605 XP_005253340 15 9605 XP_005253339 15 9605 XP_006717999 15 9605 XP_006715301 15 9605 XP_005270452 15 9605 NP_001092763 15 9605 NP_006836 15 9605>NP_001276866 Length = 1055 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VAIKV REN Sbjct: 750 VAIKVLREN 758>NP_004439 Length = 1255 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VAIKV REN Sbjct: 750 VAIKVLREN 758>NP_001276865 Length = 1240 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VAIKV REN Sbjct: 735 VAIKVLREN 743>NP_001005862 Length = 1225 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VAIKV REN Sbjct: 720 VAIKVLREN 728>XP_005257197 Length = 1225 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VAIKV REN Sbjct: 720 VAIKVLREN 728>XP_006721828 Length = 1336 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VAIKV REN Sbjct: 831 VAIKVLREN 839>NP_001273538 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 175 LALKVSRKN 183>NP_115507 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 340 LALKVSRKN 348>XP_006715637 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 175 LALKVSRKN 183>XP_005267214 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 175 LALKVSRKN 183>XP_005267213 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 340 LALKVSRKN 348>XP_006715636 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 340 LALKVSRKN 348>XP_005267212 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 340 LALKVSRKN 348>XP_005267211 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 VAIKVSREN 9 +A+KVSR+N Sbjct: 340 LALKVSRKN 348>NP_001035519 Length = 1159 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 +A+K REN Sbjct: 726 IAVKCKREN 734>NP_056157 Length = 646 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VA+ VS+EN Sbjct: 34 VAVAVSQEN 42>XP_005266415 Length = 1158 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 +A+K REN Sbjct: 726 IAVKCKREN 734>XP_005266414 Length = 1159 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 +A+K REN Sbjct: 726 IAVKCKREN 734>NP_001171809 Length = 1148 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 VAIK R+N Sbjct: 699 VAIKCKRDN 707>NP_001098713 Length = 1101 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 VAIK R+N Sbjct: 699 VAIKCKRDN 707>NP_065817 Length = 1100 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 VAIK R+N Sbjct: 699 VAIKCKRDN 707>NP_065681 Length = 1072 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VA+K+ +EN Sbjct: 755 VAVKMLKEN 763>NP_066124 Length = 1114 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VA+K+ +EN Sbjct: 755 VAVKMLKEN 763>NP_057460 Length = 1170 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIKVSREN 9 AIKV RE+ Sbjct: 225 AIKVERED 232>NP_001265393 Length = 749 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 209 ALKISRE 215>NP_036192 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 196 ALKISRE 202>NP_005681 Length = 699 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 196 ALKISRE 202>NP_036193 Length = 710 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 196 ALKISRE 202>NP_001265392 Length = 725 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 196 ALKISRE 202>NP_001265394 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 209 ALKISRE 215>NP_001244928 Length = 1211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIKVSREN 9 AIKV RE+ Sbjct: 267 AIKVERED 274>NP_036442 Length = 1232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IKVSREN 9 +KVSR+N Sbjct: 1076 VKVSRKN 1082>NP_003904 Length = 1007 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 VA+K+ R N Sbjct: 714 VAVKIIRNN 722>NP_002908 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 +A+K +R+N Sbjct: 62 IAVKTTRKN 70>XP_006721607 Length = 1130 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIKVSREN 9 AIKV RE+ Sbjct: 225 AIKVERED 232>XP_005256736 Length = 1169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIKVSREN 9 AIKV RE+ Sbjct: 225 AIKVERED 232>XP_005253340 Length = 587 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 47 ALKISRE 53>XP_005253339 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AIKVSRE 8 A+K+SRE Sbjct: 209 ALKISRE 215>XP_006717999 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 VAIKVSREN 9 VA+K+ +EN Sbjct: 848 VAVKMLKEN 856>XP_006715301 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 VA+K+ R N Sbjct: 714 VAVKIIRNN 722>XP_005270452 Length = 684 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 +AIK+ R N Sbjct: 15 LAIKIQRSN 23>NP_001092763 Length = 1234 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IKVSREN 9 +KVSR+N Sbjct: 1078 VKVSRKN 1084>NP_006836 Length = 725 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 VAIKVSREN 9 +AIK+ R N Sbjct: 15 LAIKIQRSN 23Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.122 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 332,591 Number of extensions: 598 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |