Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_114426 16 5631 NP_061821 16 7355 NP_001128119 16 7355 NP_940997 16 7355 XP_006713973 16 7355 XP_006713972 16 7355 XP_006713971 16 7355 XP_005263534 16 7355 XP_006710760 16 7355 NP_001707 15 9605 NP_116743 15 9605 NP_775837 15 9605 NP_071451 15 9605 NP_056164 15 9605 XP_006724284 15 9605 XP_006724283 15 9605 XP_006724282 15 9605 XP_005261537 15 9605 XP_005249030 15 9605 XP_005249029 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 AEGSVSKV Sbjct: 1031 AEGSVSKV 1038>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 AEGSVSKV Sbjct: 1031 AEGSVSKV 1038>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 AEGSVSKV Sbjct: 1031 AEGSVSKV 1038>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 AEGSVSKV Sbjct: 1031 AEGSVSKV 1038>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 AEGSVSKV Sbjct: 1031 AEGSVSKV 1038>NP_114426 Length = 273 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 VAEGSVSKV 9 + EGS SKV Sbjct: 18 IGEGSYSKV 26>NP_061821 Length = 462 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AEGSVSKV 9 +EGS SKV Sbjct: 369 SEGSASKV 376>NP_001128119 Length = 814 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 A+G+VSKV Sbjct: 312 AKGTVSKV 319>NP_940997 Length = 730 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 A+G+VSKV Sbjct: 312 AKGTVSKV 319>XP_006713973 Length = 558 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 A+G+VSKV Sbjct: 333 AKGTVSKV 340>XP_006713972 Length = 751 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 A+G+VSKV Sbjct: 333 AKGTVSKV 340>XP_006713971 Length = 835 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AEGSVSKV 9 A+G+VSKV Sbjct: 333 AKGTVSKV 340>XP_005263534 Length = 411 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AEGSVSKV 9 +EGS SKV Sbjct: 318 SEGSASKV 325>XP_006710760 Length = 462 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AEGSVSKV 9 +EGS SKV Sbjct: 369 SEGSASKV 376>NP_001707 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VAEGSVSKV 9 VAEGSV V Sbjct: 108 VAEGSVGWV 116>NP_116743 Length = 327 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 VAEGSVSKV 9 VAEGSV V Sbjct: 63 VAEGSVGWV 71>NP_775837 Length = 2151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VAEGSVSKV 9 VAE +VSK+ Sbjct: 1958 VAESAVSKL 1966>NP_071451 Length = 1025 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 VAEGSVS 7 +AEGSVS Sbjct: 262 LAEGSVS 268>NP_056164 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AEGSVSK 8 AEG++SK Sbjct: 889 AEGNISK 895>XP_006724284 Length = 1989 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VAEGSVSKV 9 VAE +VSK+ Sbjct: 1796 VAESAVSKL 1804>XP_006724283 Length = 2151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VAEGSVSKV 9 VAE +VSK+ Sbjct: 1958 VAESAVSKL 1966>XP_006724282 Length = 2151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VAEGSVSKV 9 VAE +VSK+ Sbjct: 1958 VAESAVSKL 1966>XP_005261537 Length = 2151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 VAEGSVSKV 9 VAE +VSK+ Sbjct: 1958 VAESAVSKL 1966>XP_005249030 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AEGSVSK 8 AEG++SK Sbjct: 889 AEGNISK 895>XP_005249029 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 AEGSVSK 8 AEG++SK Sbjct: 889 AEGNISK 895Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.113 0.258 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 435,499 Number of extensions: 399 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |