Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_054742 17 4312 NP_001935 16 5631 NP_001240775 16 7355 NP_001491 16 7355 NP_004648 16 7355 XP_006715129 16 7355 NP_001034484 15 9605 NP_001138890 15 9605 NP_899230 15 9605 XP_006725221 15 9605 XP_006724234 15 9605 XP_005261462 15 9605 XP_006716866 15 9605 XP_006716865 15 9605 XP_006716864 15 9605 XP_005251556 15 9605 XP_006716863 15 9605 XP_006716862 15 9605 XP_006716861 15 9605 XP_006716860 15 9605 XP_006716859 15 9605 XP_006716858 15 9605>NP_054742 Length = 494 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TYQASTSLV 9 TY+ASTS + Sbjct: 125 TYKASTSKI 133>NP_001935 Length = 999 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TYQASTSLV 9 TY AS SLV Sbjct: 936 TYSASGSLV 944>NP_001240775 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YQASTS 7 YQASTS Sbjct: 121 YQASTS 126>NP_001491 Length = 372 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YQASTS 7 YQASTS Sbjct: 151 YQASTS 156>NP_004648 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YQASTS 7 YQASTS Sbjct: 103 YQASTS 108>XP_006715129 Length = 290 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YQASTS 7 YQASTS Sbjct: 151 YQASTS 156>NP_001034484 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 256 TYQHSTS 262>NP_001138890 Length = 2481 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TYQASTSL 8 TY +STS+ Sbjct: 1475 TYSSSTSM 1482>NP_899230 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TYQASTSLV 9 T ASTSLV Sbjct: 301 TASASTSLV 309>XP_006725221 Length = 165 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 TYQASTSL 8 TY STSL Sbjct: 141 TYSESTSL 148>XP_006724234 Length = 2363 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TYQASTSL 8 TY +STS+ Sbjct: 1357 TYSSSTSM 1364>XP_005261462 Length = 2473 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TYQASTSL 8 TY +STS+ Sbjct: 1475 TYSSSTSM 1482>XP_006716866 Length = 225 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 147 TYQHSTS 153>XP_006716865 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 191 TYQHSTS 197>XP_006716864 Length = 283 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 205 TYQHSTS 211>XP_005251556 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 248 TYQHSTS 254>XP_006716863 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 295 TYQHSTS 301>XP_006716862 Length = 392 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 314 TYQHSTS 320>XP_006716861 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 328 TYQHSTS 334>XP_006716860 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 328 TYQHSTS 334>XP_006716859 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 328 TYQHSTS 334>XP_006716858 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 TYQASTS 7 TYQ STS Sbjct: 328 TYQHSTS 334Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.106 0.251 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 302,637 Number of extensions: 379 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |