Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_078961 17 4312 XP_006719666 17 4312 NP_004437 16 5631 NP_000149 16 7355 NP_001010904 16 7355 NP_001136013 16 7355 NP_057032 16 7355 XP_006715167 16 7355 XP_005249215 16 7355 XP_006715166 16 7355 XP_006715165 16 7355 XP_005249214 16 7355 XP_005249213 16 7355 NP_001073920 15 9605 NP_005015 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TYMIIANAL 9 TY IIANAL Sbjct: 3333 TYRIIANAL 3341>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TYMIIANAL 9 TY IIANAL Sbjct: 3333 TYRIIANAL 3341>NP_078961 Length = 723 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 MIIANAL 9 MIIANAL Sbjct: 631 MIIANAL 637>XP_006719666 Length = 657 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 MIIANAL 9 MIIANAL Sbjct: 565 MIIANAL 571>NP_004437 Length = 1512 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TYMIIANAL 9 T+M++AN + Sbjct: 1422 THMVVANTM 1430>NP_000149 Length = 702 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TYMIIANAL 9 TY+++AN L Sbjct: 391 TYLMLANHL 399>NP_001010904 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TYMIIANA 8 TY+ +ANA Sbjct: 155 TYLSVANA 162>NP_001136013 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 145 TYMIIA 150>NP_057032 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 145 TYMIIA 150>XP_006715167 Length = 285 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 147 TYMIIA 152>XP_005249215 Length = 369 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 113 TYMIIA 118>XP_006715166 Length = 372 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 147 TYMIIA 152>XP_006715165 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 145 TYMIIA 150>XP_005249214 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 145 TYMIIA 150>XP_005249213 Length = 403 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TYMIIA 6 TYMIIA Sbjct: 147 TYMIIA 152>NP_001073920 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 TYMIIAN 7 T+M++AN Sbjct: 203 TFMVLAN 209>NP_005015 Length = 397 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TYMIIANAL 9 T MI+ NAL Sbjct: 179 TRMILVNAL 187Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.137 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 244,550 Number of extensions: 538 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |