Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 20 509 NP_005913 20 509 XP_005267046 20 509 XP_005267045 20 509 NP_077719 17 4312 XP_005270959 17 4312 XP_005270958 17 4312 XP_006710730 17 4312 NP_714915 16 5631 NP_001135773 16 5631 XP_006716750 16 5631 XP_006716749 16 5631 XP_006716748 16 5631 NP_001743 16 7355 NP_004090 16 7355 NP_001257456 16 7355 NP_001257455 16 7355 NP_001129334 15 9605 NP_612424 15 9605 NP_001229379 15 9605 NP_057405 15 9605 XP_006724185 15 9605 XP_006724184 15 9605>NP_006715 Length = 1558 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TVVGIKNLS 9 TV+GIKNLS Sbjct: 412 TVLGIKNLS 420>NP_005913 Length = 1608 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TVVGIKNLS 9 TV+GIKNLS Sbjct: 412 TVLGIKNLS 420>XP_005267046 Length = 1554 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TVVGIKNLS 9 TV+GIKNLS Sbjct: 412 TVLGIKNLS 420>XP_005267045 Length = 1604 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TVVGIKNLS 9 TV+GIKNLS Sbjct: 412 TVLGIKNLS 420>NP_077719 Length = 2471 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VGIKNLS 9 VG+KNLS Sbjct: 1735 VGLKNLS 1741>XP_005270959 Length = 2432 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VGIKNLS 9 VG+KNLS Sbjct: 1696 VGLKNLS 1702>XP_005270958 Length = 2432 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VGIKNLS 9 VG+KNLS Sbjct: 1696 VGLKNLS 1702>XP_006710730 Length = 2432 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VGIKNLS 9 VG+KNLS Sbjct: 1696 VGLKNLS 1702>NP_714915 Length = 995 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 VVG KNL+ Sbjct: 701 VVGFKNLA 708>NP_001135773 Length = 914 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 VVG KNL+ Sbjct: 620 VVGFKNLA 627>XP_006716750 Length = 795 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 VVG KNL+ Sbjct: 501 VVGFKNLA 508>XP_006716749 Length = 894 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 VVG KNL+ Sbjct: 600 VVGFKNLA 607>XP_006716748 Length = 980 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 VVG KNL+ Sbjct: 686 VVGFKNLA 693>NP_001743 Length = 527 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 GIKNLS 9 GIKNLS Sbjct: 241 GIKNLS 246>NP_004090 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 V+G KNLS Sbjct: 154 VLGTKNLS 161>NP_001257456 Length = 168 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 V+G KNLS Sbjct: 154 VLGTKNLS 161>NP_001257455 Length = 197 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VVGIKNLS 9 V+G KNLS Sbjct: 154 VLGTKNLS 161>NP_001129334 Length = 489 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVVGIKNLS 9 TVV +KN S Sbjct: 102 TVVSVKNPS 110>NP_612424 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVVGIKNLS 9 TVV +KN S Sbjct: 102 TVVSVKNPS 110>NP_001229379 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVVGIKNLS 9 TVV +KN S Sbjct: 90 TVVSVKNPS 98>NP_057405 Length = 479 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VVGIKNL 8 VVG++NL Sbjct: 119 VVGVENL 125>XP_006724185 Length = 489 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVVGIKNLS 9 TVV +KN S Sbjct: 102 TVVSVKNPS 110>XP_006724184 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVVGIKNLS 9 TVV +KN S Sbjct: 102 TVVSVKNPS 110Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.132 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 407,525 Number of extensions: 598 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |