Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055726 18 1935 NP_004524 16 5631 NP_057256 16 7355 NP_004116 16 7355 NP_002068 15 9605 NP_001240766 15 9605 XP_006717126 15 9605 XP_005251986 15 9605 XP_006717125 15 9605>NP_055726 Length = 961 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VKASEAAA 9 VKASEAAA Sbjct: 337 VKASEAAA 344>NP_004524 Length = 1141 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TVKASEAA 8 TVKASE A Sbjct: 449 TVKASEQA 456>NP_057256 Length = 405 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TVKASEAAA 9 T ASEAAA Sbjct: 253 TAAASEAAA 261>NP_004116 Length = 153 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVKASEAAA 9 T+K S+AAA Sbjct: 110 TLKVSQAAA 118>NP_002068 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TVKASEAA 8 T+KA EAA Sbjct: 554 TLKAEEAA 561>NP_001240766 Length = 758 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TVKASEAA 8 +VKASEA+ Sbjct: 19 SVKASEAS 26>XP_006717126 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TVKASEAA 8 T+KA EAA Sbjct: 554 TLKAEEAA 561>XP_005251986 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TVKASEAA 8 T+KA EAA Sbjct: 554 TLKAEEAA 561>XP_006717125 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TVKASEAA 8 T+KA EAA Sbjct: 554 TLKAEEAA 561Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.285 0.0905 0.190 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 180,040 Number of extensions: 116 Number of successful extensions: 9 Number of sequences better than 10000.0: 9 Number of HSP's gapped: 9 Number of HSP's successfully gapped: 9 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |