Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_443179 20 509 XP_005266703 20 509 NP_004250 17 4312 XP_005257879 17 4312 XP_006722249 17 4312 XP_005257875 17 4312 NP_002372 16 5631 NP_775866 16 7355 NP_001273700 16 7355 NP_115593 16 7355 NP_004228 16 7355 NP_066277 16 7355 NP_942592 16 7355 XP_005256248 16 7355 XP_005248445 16 7355 XP_005265730 16 7355 XP_005265729 16 7355 XP_005265728 16 7355 XP_005265724 16 7355 XP_006710481 16 7355 NP_113678 16 7355 NP_003733 15 9605 NP_001269810 15 9605 NP_001093587 15 9605 NP_055492 15 9605 NP_001092284 15 9605 XP_006716762 15 9605 XP_006716758 15 9605 XP_006716757 15 9605 XP_006716756 15 9605 XP_005251165 15 9605 XP_005251164 15 9605 XP_005251163 15 9605 XP_006716755 15 9605 XP_006716754 15 9605 XP_006716753 15 9605 XP_006712881 15 9605 XP_006712880 15 9605 NP_001276 15 9605>NP_443179 Length = 2170 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TVDRADLRS 9 TVDRAD RS Sbjct: 1113 TVDRADFRS 1121>XP_005266703 Length = 1501 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TVDRADLRS 9 TVDRAD RS Sbjct: 444 TVDRADFRS 452>NP_004250 Length = 991 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 570 TADEADLRA 578>XP_005257879 Length = 586 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 165 TADEADLRA 173>XP_006722249 Length = 607 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 165 TADEADLRA 173>XP_005257875 Length = 1012 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 570 TADEADLRA 578>NP_002372 Length = 486 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VDRADLRS 9 VDRAD+ S Sbjct: 222 VDRADMAS 229>NP_775866 Length = 1076 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 TVDRADLR 8 T D ADLR Sbjct: 713 TADAADLR 720>NP_001273700 Length = 2490 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 45 TADGADLRT 53>NP_115593 Length = 2603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 158 TADGADLRT 166>NP_004228 Length = 432 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VDRADLR 8 VDRAD++ Sbjct: 310 VDRADIK 316>NP_066277 Length = 366 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TVDRADL 7 T+DRAD+ Sbjct: 42 TLDRADM 48>NP_942592 Length = 2352 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 158 TADGADLRT 166>XP_005256248 Length = 808 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T DR D+R+ Sbjct: 282 TTDRLDIRA 290>XP_005248445 Length = 417 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VDRADLR 8 VDRAD++ Sbjct: 295 VDRADIK 301>XP_005265730 Length = 1480 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 158 TADGADLRT 166>XP_005265729 Length = 1543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 158 TADGADLRT 166>XP_005265728 Length = 2351 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 158 TADGADLRT 166>XP_005265724 Length = 2602 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T D ADLR+ Sbjct: 158 TADGADLRT 166>XP_006710481 Length = 542 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TVDRADLRS 9 ++ RADLRS Sbjct: 460 SLTRADLRS 468>NP_113678 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 T DR D+R+ Sbjct: 326 TTDRLDIRA 334>NP_003733 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 TVD D+RS Sbjct: 480 TVDGHDIRS 488>NP_001269810 Length = 1188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 251 IDRPDLR 257>NP_001093587 Length = 1349 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 443 IDRPDLR 449>NP_055492 Length = 1163 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 251 IDRPDLR 257>NP_001092284 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VDRADL 7 +DRADL Sbjct: 215 IDRADL 220>XP_006716762 Length = 1571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 487 IDRPDLR 493>XP_006716758 Length = 1269 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 487 IDRPDLR 493>XP_006716757 Length = 1356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 251 IDRPDLR 257>XP_006716756 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 487 IDRPDLR 493>XP_005251165 Length = 1532 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 483 IDRPDLR 489>XP_005251164 Length = 1552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 443 IDRPDLR 449>XP_005251163 Length = 1574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 443 IDRPDLR 449>XP_006716755 Length = 1634 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 487 IDRPDLR 493>XP_006716754 Length = 1655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 487 IDRPDLR 493>XP_006716753 Length = 1656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VDRADLR 8 +DR DLR Sbjct: 487 IDRPDLR 493>XP_006712881 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 TVD D+RS Sbjct: 494 TVDGHDIRS 502>XP_006712880 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TVDRADLRS 9 TVD D+RS Sbjct: 494 TVDGHDIRS 502>NP_001276 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VDRADLRS 9 VD+ DL+S Sbjct: 847 VDKVDLKS 854Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.129 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 412,896 Number of extensions: 484 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |