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Blast-Search of mutated query peptide against human proteome

BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_001257436                                                           18    1482
NP_001257437                                                           18    1482
NP_006281                                                              18    1482
XP_006715618                                                           18    1482
XP_005267176                                                           18    1482
NP_055898                                                              16    7355
NP_057591                                                              16    7355
NP_150229                                                              16    7355
XP_005257515                                                           16    7355
XP_005257513                                                           16    7355
NP_689845                                                              15    9605
NP_001177736                                                           15    9605
NP_683725                                                              15    9605

>NP_001257436
          Length = 790

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   TTVEASSSL 9
           TT EASSSL
Sbjct: 543 TTAEASSSL 551



>NP_001257437
          Length = 790

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   TTVEASSSL 9
           TT EASSSL
Sbjct: 543 TTAEASSSL 551



>NP_006281
          Length = 790

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   TTVEASSSL 9
           TT EASSSL
Sbjct: 543 TTAEASSSL 551



>XP_006715618
          Length = 577

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   TTVEASSSL 9
           TT EASSSL
Sbjct: 330 TTAEASSSL 338



>XP_005267176
          Length = 790

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   TTVEASSSL 9
           TT EASSSL
Sbjct: 543 TTAEASSSL 551



>NP_055898
          Length = 1481

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1    TTVEASSS 8
            TT+EASS+
Sbjct: 1195 TTLEASST 1202



>NP_057591
          Length = 1490

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1    TTVEASSS 8
            TT+EASS+
Sbjct: 1195 TTLEASST 1202



>NP_150229
          Length = 1359

 Score = 15.8 bits (29), Expect =  7355
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1   TTVEASSSL 9
           TT+ ASSSL
Sbjct: 876 TTLMASSSL 884



>XP_005257515
          Length = 1256

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1    TTVEASSS 8
            TT+EASS+
Sbjct: 1195 TTLEASST 1202



>XP_005257513
          Length = 1489

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1    TTVEASSS 8
            TT+EASS+
Sbjct: 1194 TTLEASST 1201



>NP_689845
          Length = 976

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 2   TVEASSSL 9
           TVEA SSL
Sbjct: 906 TVEAYSSL 913



>NP_001177736
          Length = 124

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1  TTVEASSS 8
          TT+++SSS
Sbjct: 91 TTIDSSSS 98



>NP_683725
          Length = 134

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   TTVEASSS 8
           TT+++SSS
Sbjct: 101 TTIDSSSS 108



  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.278   0.0906    0.185 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 274,226
Number of extensions: 176
Number of successful extensions: 13
Number of sequences better than 10000.0: 13
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 13
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 18 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (14.7 bits)
S2: 28 (15.4 bits)