Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000312 19 665 NP_060798 16 5631 XP_005263769 16 5631 XP_005263768 16 5631 NP_001127854 16 7355 NP_001171811 16 7355 NP_055684 16 7355 NP_001171808 16 7355 NP_003865 16 7355 NP_001171810 16 7355 NP_055840 15 9605 NP_005406 15 9605 NP_149038 15 9605 NP_057191 15 9605 NP_003957 15 9605 NP_001243275 15 9605 NP_757385 15 9605 NP_115807 15 9605 NP_722576 15 9605 NP_001018054 15 9605 NP_079328 15 9605 NP_001026872 15 9605 NP_001243277 15 9605 NP_001243276 15 9605 XP_005262424 15 9605 XP_005255623 15 9605 XP_006714571 15 9605 XP_006714570 15 9605 XP_006714569 15 9605 XP_006714540 15 9605 XP_006712837 15 9605 XP_006712775 15 9605 XP_005263800 15 9605 XP_006711931 15 9605 XP_006711930 15 9605 XP_006711929 15 9605 XP_006711928 15 9605 XP_006711927 15 9605 XP_006711926 15 9605 XP_006711925 15 9605 NP_076936 15 9605>NP_000312 Length = 928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TTSVNSTAN 9 TT VNSTAN Sbjct: 619 TTRVNSTAN 627>NP_060798 Length = 1494 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSVNST 7 TT+VNST Sbjct: 1105 TTAVNST 1111>XP_005263769 Length = 1727 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSVNST 7 TT+VNST Sbjct: 1338 TTAVNST 1344>XP_005263768 Length = 1727 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSVNST 7 TT+VNST Sbjct: 1338 TTAVNST 1344>NP_001127854 Length = 1114 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SVNSTAN 9 S+NST+N Sbjct: 458 SINSTSN 464>NP_001171811 Length = 214 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVNSTAN 9 SVNST N Sbjct: 30 SVNSTCN 36>NP_055684 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SVNSTAN 9 S+NST+N Sbjct: 472 SINSTSN 478>NP_001171808 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVNSTAN 9 SVNST N Sbjct: 144 SVNSTCN 150>NP_003865 Length = 328 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVNSTAN 9 SVNST N Sbjct: 144 SVNSTCN 150>NP_001171810 Length = 272 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVNSTAN 9 SVNST N Sbjct: 144 SVNSTCN 150>NP_055840 Length = 1184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>NP_005406 Length = 679 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TSVNSTAN 9 TS++ST N Sbjct: 342 TSIDSTVN 349>NP_149038 Length = 512 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 109 TTNVNSLA 116>NP_057191 Length = 1074 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TSVNSTAN 9 +S+NST+N Sbjct: 475 SSLNSTSN 482>NP_003957 Length = 1074 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 308 TTNVNSIA 315>NP_001243275 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 376 TTNVNSIA 383>NP_757385 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TSVNST 7 TSVNST Sbjct: 538 TSVNST 543>NP_115807 Length = 616 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TSVNST 7 TSVNST Sbjct: 537 TSVNST 542>NP_722576 Length = 3080 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 1224 TTSVNS 1229>NP_001018054 Length = 1215 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNSTAN 9 +NSTAN Sbjct: 540 INSTAN 545>NP_079328 Length = 1328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNSTAN 9 +NSTAN Sbjct: 653 INSTAN 658>NP_001026872 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 376 TTNVNSIA 383>NP_001243277 Length = 1057 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 318 TTNVNSIA 325>NP_001243276 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 430 TTNVNSIA 437>XP_005262424 Length = 2875 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 1019 TTSVNS 1024>XP_005255623 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTSVNSTAN 9 TTS +STA+ Sbjct: 397 TTSCSSTAS 405>XP_006714571 Length = 917 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 151 TTNVNSIA 158>XP_006714570 Length = 1074 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 308 TTNVNSIA 315>XP_006714569 Length = 1074 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTSVNSTA 8 TT+VNS A Sbjct: 308 TTNVNSIA 315>XP_006714540 Length = 1030 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TSVNSTAN 9 +S+NST+N Sbjct: 431 SSLNSTSN 438>XP_006712837 Length = 1328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VNSTAN 9 +NSTAN Sbjct: 653 INSTAN 658>XP_006712775 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TSVNSTAN 9 TS++ST N Sbjct: 89 TSIDSTVN 96>XP_005263800 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TSVNSTAN 9 TS++ST N Sbjct: 89 TSIDSTVN 96>XP_006711931 Length = 1162 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>XP_006711930 Length = 1186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>XP_006711929 Length = 1186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>XP_006711928 Length = 1188 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>XP_006711927 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>XP_006711926 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>XP_006711925 Length = 1209 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TTSVNS 6 TTSVNS Sbjct: 412 TTSVNS 417>NP_076936 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTSVNSTAN 9 TTS +STA+ Sbjct: 397 TTSCSSTAS 405Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.276 0.0859 0.194 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 287,905 Number of extensions: 388 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |