Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 18 1482 NP_000242 18 1482 XP_005264389 18 1482 NP_000867 16 7355 NP_061897 16 7355 XP_005264436 16 7355 XP_006712098 16 7355 XP_006712097 16 7355 NP_001136272 15 9605 NP_001020419 15 9605>NP_001245210 Length = 868 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TTSILRSAT 9 T SILRSAT Sbjct: 666 TASILRSAT 674>NP_000242 Length = 934 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TTSILRSAT 9 T SILRSAT Sbjct: 732 TASILRSAT 740>XP_005264389 Length = 921 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TTSILRSAT 9 T SILRSAT Sbjct: 732 TASILRSAT 740>NP_000867 Length = 2491 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SILRSAT 9 S+LRSAT Sbjct: 99 SVLRSAT 105>NP_061897 Length = 2071 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSILRS 7 TTS+LRS Sbjct: 710 TTSLLRS 716>XP_005264436 Length = 1881 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSILRS 7 TTS+LRS Sbjct: 710 TTSLLRS 716>XP_006712098 Length = 2059 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSILRS 7 TTS+LRS Sbjct: 698 TTSLLRS 704>XP_006712097 Length = 2070 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TTSILRS 7 TTS+LRS Sbjct: 710 TTSLLRS 716>NP_001136272 Length = 3144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TTSILRS 7 TTS++RS Sbjct: 1424 TTSVIRS 1430>NP_001020419 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TSILRSA 8 TS+LRSA Sbjct: 16 TSLLRSA 22Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.108 0.244 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 249,052 Number of extensions: 192 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |