Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1482 XP_005262424 18 1482 NP_006176 17 3301 NP_001273490 17 3301 XP_006718633 17 3301 XP_006718632 17 3301 XP_006718631 17 3301 XP_006718630 17 3301 XP_006718629 17 3301 XP_006718628 17 3301 XP_006718627 17 3301 XP_006718626 17 3301 XP_006718625 17 3301 NP_061720 17 3301 NP_002153 16 7355 NP_001195 15 9605 NP_067048 15 9605>NP_722576 Length = 3080 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQ LNATV Sbjct: 831 TTQRLNATV 839>XP_005262424 Length = 2875 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQ LNATV Sbjct: 626 TTQRLNATV 634>NP_006176 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>NP_001273490 Length = 2101 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1797 TTQIINITM 1805>XP_006718633 Length = 2101 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1797 TTQIINITM 1805>XP_006718632 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718631 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718630 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718629 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718628 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718627 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718626 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>XP_006718625 Length = 2115 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 1811 TTQIINITM 1819>NP_061720 Length = 4024 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TTQILNATV 9 TTQI+N T+ Sbjct: 2149 TTQIVNGTM 2157>NP_002153 Length = 547 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QILNATV 9 Q+LNATV Sbjct: 261 QMLNATV 267>NP_001195 Length = 1038 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TTQILNATV 9 TTQ N TV Sbjct: 822 TTQYANGTV 830>NP_067048 Length = 248 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TQILNATV 9 T +LNATV Sbjct: 214 TVLLNATV 221Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.117 0.281 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 297,415 Number of extensions: 375 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |