Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_892006 18 1135 NP_149062 18 1135 NP_722576 18 1135 XP_005262424 18 1135 XP_006715488 18 1135 XP_006715487 18 1135 XP_006715486 18 1135 XP_006715485 18 1135 XP_006715484 18 1135 XP_006715483 18 1135 XP_006715482 18 1135 XP_006715481 18 1135 XP_006715480 18 1135 XP_006715479 18 1135 XP_006715478 18 1135 XP_006715477 18 1135 XP_006715476 18 1135 XP_006715475 18 1135 XP_006715474 18 1135 XP_006715473 18 1135 XP_006715472 18 1135 XP_006715471 18 1135 XP_006715470 18 1135 NP_001191676 17 2528 NP_002904 17 2528 NP_000114 17 3301 NP_001191354 17 3301 NP_060823 17 4312 XP_005267890 17 4312 NP_612144 17 4312 NP_003189 16 5631 XP_005264824 16 7355 NP_938012 16 7355 NP_001010892 15 9605 NP_001130033 15 9605 NP_001013653 15 9605 NP_001161693 15 9605 XP_006715532 15 9605 XP_005246404 15 9605>NP_892006 Length = 8797 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1894 TNSMNKNE 1901>NP_149062 Length = 8749 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TTNSMKKNE 9 TTNSMKK + Sbjct: 336 TTNSMKKTK 344>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TTNSMKKNE 9 TTNSMKK + Sbjct: 131 TTNSMKKTK 139>XP_006715488 Length = 8721 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715487 Length = 8744 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715486 Length = 8758 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715485 Length = 8793 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1848 TNSMNKNE 1855>XP_006715484 Length = 8794 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715483 Length = 8795 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715482 Length = 8797 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1894 TNSMNKNE 1901>XP_006715481 Length = 8799 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1854 TNSMNKNE 1861>XP_006715480 Length = 8799 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715479 Length = 8804 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715478 Length = 8809 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715477 Length = 8822 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1877 TNSMNKNE 1884>XP_006715476 Length = 8823 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715475 Length = 8827 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715474 Length = 8829 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1884 TNSMNKNE 1891>XP_006715473 Length = 8832 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715472 Length = 8839 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1894 TNSMNKNE 1901>XP_006715471 Length = 8842 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>XP_006715470 Length = 8846 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNSM KNE Sbjct: 1901 TNSMNKNE 1908>NP_001191676 Length = 1148 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TNSMKKNE 9 T++MKKNE Sbjct: 138 TSNMKKNE 145>NP_002904 Length = 1147 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TNSMKKNE 9 T++MKKNE Sbjct: 138 TSNMKKNE 145>NP_000114 Length = 1186 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNS+ KNE Sbjct: 530 TNSVSKNE 537>NP_001191354 Length = 1640 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TNS+ KNE Sbjct: 984 TNSVSKNE 991>NP_060823 Length = 1132 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TN +KKN+ Sbjct: 374 TNGLKKNQ 381>XP_005267890 Length = 1132 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TNSMKKNE 9 TN +KKN+ Sbjct: 374 TNGLKKNQ 381>NP_612144 Length = 740 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTNSMKKN 8 T NS+KKN Sbjct: 89 TENSIKKN 96>NP_003189 Length = 798 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TTNSMKKNE 9 T NS++K+E Sbjct: 77 TVNSLRKHE 85>XP_005264824 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NSMKKNE 9 N+MKKN+ Sbjct: 276 NAMKKNK 282>NP_938012 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NSMKKNE 9 N+MKKN+ Sbjct: 276 NAMKKNK 282>NP_001010892 Length = 716 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NSMKKNE 9 NS++KNE Sbjct: 561 NSIQKNE 567>NP_001130033 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TTNSMKKNE 9 +++SMKK+E Sbjct: 225 SSSSMKKDE 233>NP_001013653 Length = 293 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TTNSMKKNE 9 +++SMKK+E Sbjct: 225 SSSSMKKDE 233>NP_001161693 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TTNSMKKN 8 T NS+K+N Sbjct: 623 TKNSLKEN 630>XP_006715532 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NSMKKNE 9 NS++KNE Sbjct: 561 NSIQKNE 567>XP_005246404 Length = 1821 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TTNSMKKN 8 T NS+K+N Sbjct: 624 TKNSLKEN 631Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.279 0.0939 0.218 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 496,284 Number of extensions: 995 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |