Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 19 869 NP_653080 19 869 XP_005267292 19 869 XP_005267291 19 869 XP_005267290 19 869 NP_060569 17 4312 NP_001258713 17 4312 NP_001258712 17 4312 NP_004361 16 5631 XP_006715397 16 5631 NP_066933 16 7355 NP_982284 16 7355 XP_005251116 16 7355 XP_006716714 16 7355 XP_005245099 16 7355 XP_005245098 16 7355 XP_005245097 16 7355 NP_001013725 15 9605 NP_775740 15 9605 NP_001138807 15 9605 NP_001271311 15 9605 NP_055869 15 9605 NP_001001671 15 9605 XP_006720833 15 9605 XP_005254845 15 9605 XP_005254844 15 9605 XP_005254450 15 9605 XP_005254449 15 9605 XP_006719360 15 9605 XP_005268797 15 9605 XP_005268796 15 9605 XP_005268795 15 9605 XP_005268794 15 9605 XP_006715518 15 9605 XP_006715517 15 9605>NP_005091 Length = 1782 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TEMLTSEL Sbjct: 1569 TEMLTSEL 1576>NP_653080 Length = 1684 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TEMLTSEL Sbjct: 1471 TEMLTSEL 1478>XP_005267292 Length = 1677 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TEMLTSEL Sbjct: 1464 TEMLTSEL 1471>XP_005267291 Length = 1684 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TEMLTSEL Sbjct: 1471 TEMLTSEL 1478>XP_005267290 Length = 1782 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TEMLTSEL Sbjct: 1569 TEMLTSEL 1576>NP_060569 Length = 515 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TEMLTSEL 9 TEML SEL Sbjct: 406 TEMLMSEL 413>NP_001258713 Length = 418 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TEMLTSEL 9 TEML SEL Sbjct: 309 TEMLMSEL 316>NP_001258712 Length = 515 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TEMLTSEL 9 TEML SEL Sbjct: 406 TEMLMSEL 413>NP_004361 Length = 3063 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 TTE L SEL Sbjct: 76 TTETLLSEL 84>XP_006715397 Length = 2972 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 TTE L SEL Sbjct: 76 TTETLLSEL 84>NP_066933 Length = 1796 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TE++TSE+ Sbjct: 357 TELITSEV 364>NP_982284 Length = 1478 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TTEMLTSEL 9 TT++L SE+ Sbjct: 742 TTQLLASEM 750>XP_005251116 Length = 1780 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TE++TSE+ Sbjct: 357 TELITSEV 364>XP_006716714 Length = 1796 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TE++TSE+ Sbjct: 357 TELITSEV 364>XP_005245099 Length = 1462 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TTEMLTSEL 9 TT++L SE+ Sbjct: 726 TTQLLASEM 734>XP_005245098 Length = 1473 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TTEMLTSEL 9 TT++L SE+ Sbjct: 737 TTQLLASEM 745>XP_005245097 Length = 1489 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TTEMLTSEL 9 TT++L SE+ Sbjct: 753 TTQLLASEM 761>NP_001013725 Length = 1649 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TEMLTSEL 9 TE+L SEL Sbjct: 993 TELLKSEL 1000>NP_775740 Length = 375 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTEMLTSE 8 TTE +TSE Sbjct: 132 TTEEVTSE 139>NP_001138807 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTEMLTSE 8 TTE +TSE Sbjct: 116 TTEEVTSE 123>NP_001271311 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTEMLTSE 8 TTE +TSE Sbjct: 97 TTEEVTSE 104>NP_055869 Length = 1464 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 +TE LTS L Sbjct: 1286 STEFLTSSL 1294>NP_001001671 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TEMLTSEL 9 TE+LTS++ Sbjct: 277 TEVLTSDI 284>XP_006720833 Length = 235 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTEMLTSE 8 TTE +TSE Sbjct: 132 TTEEVTSE 139>XP_005254845 Length = 296 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTEMLTSE 8 TTE +TSE Sbjct: 132 TTEEVTSE 139>XP_005254844 Length = 314 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TTEMLTSE 8 TTE +TSE Sbjct: 132 TTEEVTSE 139>XP_005254450 Length = 1505 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TEMLTSEL 9 TE+L SEL Sbjct: 993 TELLKSEL 1000>XP_005254449 Length = 1626 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TEMLTSEL 9 TE+L SEL Sbjct: 993 TELLKSEL 1000>XP_006719360 Length = 1011 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 +TE LTS L Sbjct: 833 STEFLTSSL 841>XP_005268797 Length = 1384 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 +TE LTS L Sbjct: 1286 STEFLTSSL 1294>XP_005268796 Length = 1403 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 +TE LTS L Sbjct: 1225 STEFLTSSL 1233>XP_005268795 Length = 1416 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 +TE LTS L Sbjct: 1238 STEFLTSSL 1246>XP_005268794 Length = 1443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TTEMLTSEL 9 +TE LTS L Sbjct: 1286 STEFLTSSL 1294>XP_006715518 Length = 1338 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TTEMLTSE 8 +TE+LTS+ Sbjct: 1007 STELLTSD 1014>XP_006715517 Length = 1379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TTEMLTSE 8 +TE+LTS+ Sbjct: 1007 STELLTSD 1014Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.108 0.243 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 333,913 Number of extensions: 646 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |