Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 869 XP_005262424 19 869 NP_036547 15 9605 NP_001192192 15 9605 NP_008879 15 9605 NP_001099001 15 9605 NP_065870 15 9605 NP_001156001 15 9605 XP_005248808 15 9605 XP_005248806 15 9605 XP_005248805 15 9605 XP_005248802 15 9605 XP_005248801 15 9605 XP_005248800 15 9605>NP_722576 Length = 3080 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSQMVEFSV 9 TSQMVEF V Sbjct: 1857 TSQMVEFPV 1865>XP_005262424 Length = 2875 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSQMVEFSV 9 TSQMVEF V Sbjct: 1652 TSQMVEFPV 1660>NP_036547 Length = 910 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSQMVEFSV 9 TS+ ++FSV Sbjct: 798 TSEHIQFSV 806>NP_001192192 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TSQMVEFSV 9 TS+ ++FSV Sbjct: 614 TSEHIQFSV 622>NP_008879 Length = 471 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 129 MVEFSV 134>NP_001099001 Length = 1319 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>NP_065870 Length = 1302 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>NP_001156001 Length = 1515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>XP_005248808 Length = 1121 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>XP_005248806 Length = 1317 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>XP_005248805 Length = 1345 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>XP_005248802 Length = 1515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>XP_005248801 Length = 1541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12>XP_005248800 Length = 1541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MVEFSV 9 MVEFSV Sbjct: 7 MVEFSV 12Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.116 0.273 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 322,647 Number of extensions: 411 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |