Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001104251 17 2528 NP_001277193 17 2528 XP_006710934 17 2528 XP_006710933 17 2528 NP_940873 16 5631 XP_006722781 16 5631 XP_005272524 16 5631>NP_001104251 Length = 405 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSALAVAML 9 TSA AVAML Sbjct: 262 TSAAAVAML 270>NP_001277193 Length = 405 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSALAVAML 9 TSA AVAML Sbjct: 262 TSAAAVAML 270>XP_006710934 Length = 465 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSALAVAML 9 TSA AVAML Sbjct: 368 TSAAAVAML 376>XP_006710933 Length = 511 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TSALAVAML 9 TSA AVAML Sbjct: 368 TSAAAVAML 376>NP_940873 Length = 821 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TSALAVAM 8 TSALA+A+ Sbjct: 764 TSALAIAL 771>XP_006722781 Length = 821 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TSALAVAM 8 TSALA+A+ Sbjct: 764 TSALAIAL 771>XP_005272524 Length = 872 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TSALAVAM 8 TSALA+A+ Sbjct: 815 TSALAIAL 822Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.117 0.260 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 140,860 Number of extensions: 66 Number of successful extensions: 7 Number of sequences better than 10000.0: 7 Number of HSP's gapped: 7 Number of HSP's successfully gapped: 7 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |