Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 869 NP_001263689 19 869 NP_001119584 19 869 NP_001119586 19 869 NP_001263625 19 869 NP_001119590 19 869 NP_001263690 19 869 NP_001119585 19 869 NP_001263624 19 869 NP_001119588 19 869 NP_001119587 19 869 NP_001119589 19 869 NP_055178 16 5631 NP_001264984 16 5631 XP_006726697 16 5631 XP_005266395 16 5631 NP_660344 16 5631 NP_114127 16 7355 NP_112181 16 7355 NP_060658 16 7355 NP_001164007 16 7355 NP_001164006 16 7355 XP_005244865 16 7355 XP_005244863 16 7355 XP_006710514 16 7355 NP_001034300 16 7355 NP_060021 15 9605 NP_001013860 15 9605 NP_001004753 15 9605 XP_006721205 15 9605 XP_005255864 15 9605 XP_006721204 15 9605 XP_006721203 15 9605 XP_006721202 15 9605 XP_006721201 15 9605 XP_005269821 15 9605 XP_006717867 15 9605 NP_001121687 15 9605>NP_000537 Length = 393 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 155 TRVRAMAIY 163>NP_001263689 Length = 354 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 116 TRVRAMAIY 124>NP_001119584 Length = 393 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 155 TRVRAMAIY 163>NP_001119586 Length = 341 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 155 TRVRAMAIY 163>NP_001263625 Length = 302 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 116 TRVRAMAIY 124>NP_001119590 Length = 354 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 116 TRVRAMAIY 124>NP_001263690 Length = 354 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 116 TRVRAMAIY 124>NP_001119585 Length = 346 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 155 TRVRAMAIY 163>NP_001263624 Length = 307 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 116 TRVRAMAIY 124>NP_001119588 Length = 209 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 23 TRVRAMAIY 31>NP_001119587 Length = 261 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 23 TRVRAMAIY 31>NP_001119589 Length = 214 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRDMAIY 9 TRVR MAIY Sbjct: 23 TRVRAMAIY 31>NP_055178 Length = 4579 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRDMAIY 9 VRD+A+Y Sbjct: 3902 VRDLALY 3908>NP_001264984 Length = 4432 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRDMAIY 9 VRD+A+Y Sbjct: 3755 VRDLALY 3761>XP_006726697 Length = 359 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 RVRDMAIY 9 R DMA+Y Sbjct: 317 RAEDMAVY 324>XP_005266395 Length = 4588 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRDMAIY 9 VRD+A+Y Sbjct: 3911 VRDLALY 3917>NP_660344 Length = 276 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVRDMAIY 9 TR+ D A+Y Sbjct: 206 TRITDRALY 214>NP_114127 Length = 648 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 327 RVRDIAI 333>NP_112181 Length = 615 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRDMAIY 9 VRD+A+Y Sbjct: 605 VRDVALY 611>NP_060658 Length = 634 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 375 RVRDIAI 381>NP_001164007 Length = 507 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 248 RVRDIAI 254>NP_001164006 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 327 RVRDIAI 333>XP_005244865 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 327 RVRDIAI 333>XP_005244863 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 327 RVRDIAI 333>XP_006710514 Length = 410 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 151 RVRDIAI 157>NP_001034300 Length = 411 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVRDMAI 8 RVRD+AI Sbjct: 152 RVRDIAI 158>NP_060021 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VRDMAIY 9 VRD A+Y Sbjct: 682 VRDSAVY 688>NP_001013860 Length = 1435 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 860 TRLRDMRL 867>NP_001004753 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VRDMAIY 9 +RD AIY Sbjct: 335 IRDKAIY 341>XP_006721205 Length = 1441 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 860 TRLRDMRL 867>XP_005255864 Length = 1372 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 824 TRLRDMRL 831>XP_006721204 Length = 1405 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 824 TRLRDMRL 831>XP_006721203 Length = 1408 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 860 TRLRDMRL 867>XP_006721202 Length = 1424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 860 TRLRDMRL 867>XP_006721201 Length = 1430 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TRVRDMAI 8 TR+RDM + Sbjct: 860 TRLRDMRL 867>XP_005269821 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 RVRDMAI 8 RVRDM + Sbjct: 316 RVRDMTV 322>XP_006717867 Length = 896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VRDMAIY 9 VRD A+Y Sbjct: 682 VRDSAVY 688>NP_001121687 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 RVRDMAI 8 RVRDM + Sbjct: 341 RVRDMTV 347Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.142 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 338,723 Number of extensions: 363 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |