Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001119588 18 1135 NP_001119587 18 1135 NP_001119589 18 1135 NP_001128668 17 4312 XP_006717666 17 4312 XP_005269535 17 4312 XP_006717665 17 4312 XP_005269533 17 4312 XP_005269534 17 4312 XP_006718551 16 7355 XP_005273928 16 7355 NP_689973 16 7355 NP_055597 15 9605 NP_808818 15 9605 NP_001269160 15 9605 XP_005278172 15 9605 XP_005278173 15 9605 XP_005278170 15 9605 XP_005278174 15 9605 XP_005278168 15 9605 XP_005278166 15 9605 XP_005278171 15 9605 XP_005278167 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 155 TRVRAMAIY 163>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 116 TRVRAMAIY 124>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 155 TRVRAMAIY 163>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 155 TRVRAMAIY 163>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 116 TRVRAMAIY 124>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 116 TRVRAMAIY 124>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 116 TRVRAMAIY 124>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 155 TRVRAMAIY 163>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 116 TRVRAMAIY 124>NP_001119588 Length = 209 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 23 TRVRAMAIY 31>NP_001119587 Length = 261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 23 TRVRAMAIY 31>NP_001119589 Length = 214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVRAMANY 9 TRVRAMA Y Sbjct: 23 TRVRAMAIY 31>NP_001128668 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRVRAMAN 8 TRV+ MAN Sbjct: 925 TRVKCMAN 932>XP_006717666 Length = 1289 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRVRAMAN 8 TRV+ MAN Sbjct: 779 TRVKCMAN 786>XP_005269535 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRVRAMAN 8 TRV+ MAN Sbjct: 925 TRVKCMAN 932>XP_006717665 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRVRAMAN 8 TRV+ MAN Sbjct: 925 TRVKCMAN 932>XP_005269533 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRVRAMAN 8 TRV+ MAN Sbjct: 925 TRVKCMAN 932>XP_005269534 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRVRAMAN 8 TRV+ MAN Sbjct: 925 TRVKCMAN 932>XP_006718551 Length = 399 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 R+RA+A+Y Sbjct: 310 RLRALADY 317>XP_005273928 Length = 415 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 R+RA+A+Y Sbjct: 310 RLRALADY 317>NP_689973 Length = 403 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 R+RA+A+Y Sbjct: 310 RLRALADY 317>NP_055597 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>NP_808818 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>NP_001269160 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278172 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278173 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278170 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278174 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278168 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278166 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278171 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616>XP_005278167 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMANY 9 ++RA+AN+ Sbjct: 609 KIRALANH 616Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.125 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 265,971 Number of extensions: 364 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |