Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_060497 15 9605 NP_001230097 15 9605 NP_001230098 15 9605 NP_001230099 15 9605 XP_005252552 15 9605 XP_006717527 15 9605 XP_006717526 15 9605 XP_005252551 15 9605 XP_006717525 15 9605 XP_006717524 15 9605 XP_005252547 15 9605 XP_005252546 15 9605 XP_006717523 15 9605 XP_006717522 15 9605 XP_006717521 15 9605 XP_006717520 15 9605 NP_612153 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 155 TRVRAMAIY 163>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 116 TRVRAMAIY 124>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 155 TRVRAMAIY 163>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 155 TRVRAMAIY 163>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 116 TRVRAMAIY 124>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 116 TRVRAMAIY 124>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 116 TRVRAMAIY 124>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 155 TRVRAMAIY 163>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 116 TRVRAMAIY 124>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 23 TRVRAMAIY 31>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 23 TRVRAMAIY 31>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRVRAMAIH 9 TRVRAMAI+ Sbjct: 23 TRVRAMAIY 31>NP_060497 Length = 1039 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 696 TRLHSLALH 704>NP_001230097 Length = 296 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVRAMAIH 9 TR+RA+ H Sbjct: 201 TRLRALGSH 209>NP_001230098 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVRAMAIH 9 TR+RA+ H Sbjct: 161 TRLRALGSH 169>NP_001230099 Length = 174 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVRAMAIH 9 TR+RA+ H Sbjct: 79 TRLRALGSH 87>XP_005252552 Length = 701 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 347 TRLHSLALH 355>XP_006717527 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 367 TRLHSLALH 375>XP_006717526 Length = 753 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 399 TRLHSLALH 407>XP_005252551 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 548 TRLHSLALH 556>XP_006717525 Length = 1062 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 708 TRLHSLALH 716>XP_006717524 Length = 1072 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 729 TRLHSLALH 737>XP_005252547 Length = 1078 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 724 TRLHSLALH 732>XP_005252546 Length = 1083 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 729 TRLHSLALH 737>XP_006717523 Length = 1095 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 741 TRLHSLALH 749>XP_006717522 Length = 1098 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 744 TRLHSLALH 752>XP_006717521 Length = 1099 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 756 TRLHSLALH 764>XP_006717520 Length = 1110 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 TRVRAMAIH 9 TR+ ++A+H Sbjct: 756 TRLHSLALH 764>NP_612153 Length = 281 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVRAMAIH 9 TR+RA+ H Sbjct: 186 TRLRALGSH 194Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.344 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 276,408 Number of extensions: 474 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |