Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001119588 18 1135 NP_001119587 18 1135 NP_001119589 18 1135 NP_683694 16 5631 NP_085135 15 9605 XP_005258413 15 9605 XP_006720777 15 9605 NP_001004758 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 155 TRVRAMAI 162>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 116 TRVRAMAI 123>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 155 TRVRAMAI 162>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 155 TRVRAMAI 162>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 116 TRVRAMAI 123>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 116 TRVRAMAI 123>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 116 TRVRAMAI 123>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 155 TRVRAMAI 162>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 116 TRVRAMAI 123>NP_001119588 Length = 209 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 23 TRVRAMAI 30>NP_001119587 Length = 261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 23 TRVRAMAI 30>NP_001119589 Length = 214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TRVRAMAI 8 TRVRAMAI Sbjct: 23 TRVRAMAI 30>NP_683694 Length = 125 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 RVRAMAIC 9 R+R++A+C Sbjct: 79 RLRSLAVC 86>NP_085135 Length = 2248 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 RVRAMAIC 9 R++AM +C Sbjct: 2216 RLKAMIVC 2223>XP_005258413 Length = 2249 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 RVRAMAIC 9 R++AM +C Sbjct: 2217 RLKAMIVC 2224>XP_006720777 Length = 292 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 RVRAMAIC 9 R+R++ IC Sbjct: 18 RIRSICIC 25>NP_001004758 Length = 323 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RAMAIC 9 RA+AIC Sbjct: 130 RALAIC 135Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.350 0.135 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 308,481 Number of extensions: 390 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |