Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001119588 18 1135 NP_001119587 18 1135 NP_001119589 18 1135 NP_001073906 18 1482 XP_006712470 18 1482 XP_006712469 18 1482 XP_006712468 18 1482 XP_005247054 18 1482 NP_002832 16 7355 NP_612361 16 7355 NP_001005169 16 7355 NP_001005170 16 7355 XP_005265410 16 7355 XP_005265409 16 7355 NP_004409 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 155 TRVRAMAIY 163>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 116 TRVRAMAIY 124>NP_001119588 Length = 209 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 23 TRVRAMAIY 31>NP_001119587 Length = 261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 23 TRVRAMAIY 31>NP_001119589 Length = 214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRVGAMAIY 9 TRV AMAIY Sbjct: 23 TRVRAMAIY 31>NP_001073906 Length = 1413 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TRVGAMAIY 9 TR+GA+A+Y Sbjct: 714 TRLGAVALY 722>XP_006712470 Length = 1327 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TRVGAMAIY 9 TR+GA+A+Y Sbjct: 714 TRLGAVALY 722>XP_006712469 Length = 1380 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TRVGAMAIY 9 TR+GA+A+Y Sbjct: 714 TRLGAVALY 722>XP_006712468 Length = 1413 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TRVGAMAIY 9 TR+GA+A+Y Sbjct: 714 TRLGAVALY 722>XP_005247054 Length = 1434 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TRVGAMAIY 9 TR+GA+A+Y Sbjct: 714 TRLGAVALY 722>NP_002832 Length = 1445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGAMAIY 9 +GAMAI+ Sbjct: 197 IGAMAIF 203>NP_612361 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TRVGAMAI 8 TR+GA+A+ Sbjct: 290 TRLGALAL 297>NP_001005169 Length = 324 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVGAMAIY 9 + VG MA+Y Sbjct: 247 SHVGVMALY 255>NP_001005170 Length = 350 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRVGAMAIY 9 + VG MA+Y Sbjct: 273 SHVGVMALY 281>XP_005265410 Length = 1416 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGAMAIY 9 +GAMAI+ Sbjct: 197 IGAMAIF 203>XP_005265409 Length = 1431 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGAMAIY 9 +GAMAI+ Sbjct: 183 IGAMAIF 189>NP_004409 Length = 314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 TRVGAMAIY 9 TR G A+Y Sbjct: 118 TRAGPTAVY 126Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 277,214 Number of extensions: 300 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |