Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 390 NP_001271427 16 5631 NP_689559 16 5631 NP_001271428 16 5631 XP_006721509 16 5631 XP_006721508 16 5631 XP_006721507 16 5631 NP_001004725 16 7355 NP_001268421 15 9605 NP_000170 15 9605 NP_001268422 15 9605 NP_001268423 15 9605 NP_001275896 15 9605 NP_001275895 15 9605 NP_001275894 15 9605 NP_110409 15 9605 NP_077817 15 9605 NP_003339 15 9605 NP_001275893 15 9605 NP_001273327 15 9605 XP_006715413 15 9605 XP_006714565 15 9605 XP_005247869 15 9605 XP_006713830 15 9605 XP_005247867 15 9605 XP_005247866 15 9605 XP_005247863 15 9605 XP_005247862 15 9605 XP_005247861 15 9605 XP_005247860 15 9605 XP_005247859 15 9605 XP_005264328 15 9605>NP_002430 Length = 1137 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TRMGAANNI 9 TRMGAA+NI Sbjct: 937 TRMGAADNI 945>NP_001271427 Length = 573 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NNI Sbjct: 342 MGAMNNI 348>NP_689559 Length = 569 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NNI Sbjct: 342 MGAMNNI 348>NP_001271428 Length = 432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NNI Sbjct: 205 MGAMNNI 211>XP_006721509 Length = 536 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NNI Sbjct: 309 MGAMNNI 315>XP_006721508 Length = 569 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NNI Sbjct: 342 MGAMNNI 348>XP_006721507 Length = 569 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NNI Sbjct: 342 MGAMNNI 348>NP_001004725 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MGAANNI 9 MGA NN+ Sbjct: 1 MGAKNNV 7>NP_001268421 Length = 1230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GA++ I Sbjct: 1045 TRLGASDRI 1053>NP_000170 Length = 1360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GA++ I Sbjct: 1175 TRLGASDRI 1183>NP_001268422 Length = 1058 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GA++ I Sbjct: 873 TRLGASDRI 881>NP_001268423 Length = 1058 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GA++ I Sbjct: 873 TRLGASDRI 881>NP_001275896 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 342 TRLGEMNN 349>NP_001275895 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>NP_001275894 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 474 TRLGEMNN 481>NP_110409 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRMGAANNI 9 + +GA NNI Sbjct: 63 SHLGAENNI 71>NP_077817 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>NP_003339 Length = 152 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRMGAANNI 9 TR+ A NNI Sbjct: 144 TRLYAMNNI 152>NP_001275893 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 476 TRLGEMNN 483>NP_001273327 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GAA+ + Sbjct: 137 TRVGAADGL 145>XP_006715413 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GAA+ + Sbjct: 137 TRVGAADGL 145>XP_006714565 Length = 565 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TRMGAANNI 9 + +GA NNI Sbjct: 63 SHLGAENNI 71>XP_005247869 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 235 TRLGEMNN 242>XP_006713830 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 318 TRLGEMNN 325>XP_005247867 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 342 TRLGEMNN 349>XP_005247866 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>XP_005247863 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>XP_005247862 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>XP_005247861 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 474 TRLGEMNN 481>XP_005247860 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>XP_005247859 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TRMGAANN 8 TR+G NN Sbjct: 494 TRLGEMNN 501>XP_005264328 Length = 1261 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TRMGAANNI 9 TR+GA++ I Sbjct: 1076 TRLGASDRI 1084Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.122 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 357,095 Number of extensions: 313 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |