Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138389 18 1135 NP_001138390 18 1135 NP_001138386 18 1135 NP_001138387 18 1135 NP_000132 18 1135 NP_075259 18 1135 NP_001138388 18 1135 NP_001138391 18 1135 NP_001138385 18 1135 NP_075418 18 1135 XP_006717776 18 1135 XP_006717775 18 1135 XP_006717774 18 1135 XP_006717773 18 1135 XP_006717772 18 1135 XP_006717771 18 1135 NP_056073 18 1935 XP_006717082 18 1935 XP_006717081 18 1935 NP_001158307 16 5631 NP_061952 16 5631 NP_114416 16 5631 NP_003039 16 5631 XP_006723775 16 5631 XP_006723773 16 5631 NP_001138822 16 5631 NP_079043 16 7355 NP_872584 16 7355 XP_006719740 16 7355 XP_005273431 16 7355 NP_054878 15 9605 NP_001007103 15 9605 NP_115814 15 9605 XP_005267218 15 9605 XP_006715641 15 9605 XP_006715640 15 9605 XP_006715639 15 9605 XP_005265151 15 9605 XP_006713182 15 9605>NP_001138389 Length = 705 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 333 TRLSSTADT 341>NP_001138390 Length = 704 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 332 TRLSSTADT 340>NP_001138386 Length = 709 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 337 TRLSSTADT 345>NP_001138387 Length = 707 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 360 TRLSSTADT 368>NP_000132 Length = 821 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 449 TRLSSTADT 457>NP_075259 Length = 822 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 450 TRLSSTADT 458>NP_001138388 Length = 706 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 334 TRLSSTADT 342>NP_001138391 Length = 680 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 361 TRLSSTADT 369>NP_001138385 Length = 769 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 450 TRLSSTADT 458>NP_075418 Length = 732 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 360 TRLSSTADT 368>XP_006717776 Length = 806 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 468 TRLSSTADT 476>XP_006717775 Length = 726 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 354 TRLSSTADT 362>XP_006717774 Length = 752 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 380 TRLSSTADT 388>XP_006717773 Length = 807 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 469 TRLSSTADT 477>XP_006717772 Length = 838 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 466 TRLSSTADT 474>XP_006717771 Length = 839 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS TADT Sbjct: 467 TRLSSTADT 475>NP_056073 Length = 1219 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TRLSLTAD 8 TRLSLT+D Sbjct: 1094 TRLSLTSD 1101>XP_006717082 Length = 1151 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TRLSLTAD 8 TRLSLT+D Sbjct: 1026 TRLSLTSD 1033>XP_006717081 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TRLSLTAD 8 TRLSLT+D Sbjct: 1084 TRLSLTSD 1091>NP_001158307 Length = 865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRLSLTAD 8 TR+ LTAD Sbjct: 788 TRIRLTAD 795>NP_061952 Length = 865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRLSLTAD 8 TR+ LTAD Sbjct: 788 TRIRLTAD 795>NP_114416 Length = 207 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TRLS+T +T Sbjct: 191 TRLSITNET 199>NP_003039 Length = 812 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 R SLTADT Sbjct: 621 RHSLTADT 628>XP_006723775 Length = 203 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TR S+T+DT Sbjct: 90 TRESMTSDT 98>XP_006723773 Length = 203 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TR S+T+DT Sbjct: 90 TRESMTSDT 98>NP_001138822 Length = 202 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TRLSLTADT 9 TR S+T+DT Sbjct: 90 TRESMTSDT 98>NP_079043 Length = 463 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TRLSLTADT 9 TR++L++DT Sbjct: 409 TRVNLSSDT 417>NP_872584 Length = 1528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TRLSLTADT 9 TR++L++DT Sbjct: 409 TRVNLSSDT 417>XP_006719740 Length = 1863 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TRLSLTAD 8 T LSLT+D Sbjct: 29 TNLSLTSD 36>XP_005273431 Length = 1528 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TRLSLTADT 9 TR++L++DT Sbjct: 409 TRVNLSSDT 417>NP_054878 Length = 2564 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRLSLTADT 9 T+LS ADT Sbjct: 1862 TKLSTEADT 1870>NP_001007103 Length = 755 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 +LSL ADT Sbjct: 151 KLSLKADT 158>NP_115814 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 +LSL ADT Sbjct: 176 KLSLKADT 183>XP_005267218 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 +LSL ADT Sbjct: 176 KLSLKADT 183>XP_006715641 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 +LSL ADT Sbjct: 176 KLSLKADT 183>XP_006715640 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 +LSL ADT Sbjct: 176 KLSLKADT 183>XP_006715639 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RLSLTADT 9 +LSL ADT Sbjct: 211 KLSLKADT 218>XP_005265151 Length = 2058 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRLSLTADT 9 T+LS ADT Sbjct: 1862 TKLSTEADT 1870>XP_006713182 Length = 2422 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TRLSLTADT 9 T+LS ADT Sbjct: 1862 TKLSTEADT 1870Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.117 0.285 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,885 Number of extensions: 489 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |