Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 665 NP_001075109 19 665 NP_055239 17 2528 NP_002213 15 9605 NP_001093422 15 9605 NP_001161744 15 9605 NP_066554 15 9605 NP_001264890 15 9605 NP_001264891 15 9605 NP_001098998 15 9605 NP_945346 15 9605 NP_003147 15 9605 XP_005261676 15 9605 XP_006724320 15 9605 XP_006713199 15 9605 XP_006713198 15 9605 XP_006713197 15 9605 XP_005265167 15 9605 XP_006713196 15 9605 XP_006713195 15 9605 XP_005265166 15 9605 XP_006713194 15 9605>NP_008835 Length = 4128 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQVTSAVRE 9 TQ+TSAVRE Sbjct: 206 TQMTSAVRE 214>NP_001075109 Length = 4097 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQVTSAVRE 9 TQ+TSAVRE Sbjct: 206 TQMTSAVRE 214>NP_055239 Length = 170 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TQVTSAVRE 9 T VTSA+RE Sbjct: 135 TSVTSALRE 143>NP_002213 Length = 2695 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1851 TQITEEVRD 1859>NP_001093422 Length = 2710 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1866 TQITEEVRD 1874>NP_001161744 Length = 2743 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1899 TQITEEVRD 1907>NP_066554 Length = 1020 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VTSAVRE 9 VTSA+RE Sbjct: 267 VTSALRE 273>NP_001264890 Length = 791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TQVTSAVRE 9 ++VT+A+RE Sbjct: 417 SEVTAALRE 425>NP_001264891 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TQVTSAVRE 9 ++VT+A+RE Sbjct: 417 SEVTAALRE 425>NP_001098998 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QVTSAVRE 9 +VT A+RE Sbjct: 371 EVTEAIRE 378>NP_945346 Length = 829 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QVTSAVRE 9 +VT A+RE Sbjct: 371 EVTEAIRE 378>NP_003147 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TQVTSAVRE 9 ++VT+A+RE Sbjct: 417 SEVTAALRE 425>XP_005261676 Length = 986 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VTSAVRE 9 VTSA+RE Sbjct: 267 VTSALRE 273>XP_006724320 Length = 1006 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VTSAVRE 9 VTSA+RE Sbjct: 267 VTSALRE 273>XP_006713199 Length = 2695 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1892 TQITEEVRD 1900>XP_006713198 Length = 2699 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1892 TQITEEVRD 1900>XP_006713197 Length = 2712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1868 TQITEEVRD 1876>XP_005265167 Length = 2719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1875 TQITEEVRD 1883>XP_006713196 Length = 2721 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1877 TQITEEVRD 1885>XP_006713195 Length = 2727 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1883 TQITEEVRD 1891>XP_005265166 Length = 2735 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1891 TQITEEVRD 1899>XP_006713194 Length = 2736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TQVTSAVRE 9 TQ+T VR+ Sbjct: 1892 TQITEEVRD 1900Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.106 0.237 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 227,729 Number of extensions: 396 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |