Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001136098 20 509 NP_000360 20 509 NP_001018046 20 509 XP_005268096 20 509 XP_006720308 20 509 XP_005268094 20 509 NP_000375 16 5631 NP_060862 16 5631 XP_005263172 16 5631 NP_056312 16 7355 NP_004704 16 7355 NP_001273416 16 7355 XP_006720531 16 7355 XP_005254344 16 7355 XP_005268258 16 7355 XP_005268257 16 7355 XP_005268256 16 7355 NP_001180462 15 9605 NP_003148 15 9605 NP_001243779 15 9605 NP_596869 15 9605 NP_055495 15 9605 NP_659473 15 9605 NP_001186094 15 9605 XP_006722261 15 9605 XP_005258130 15 9605 XP_005257183 15 9605 XP_005257182 15 9605 XP_006721807 15 9605 XP_006721806 15 9605 XP_006721805 15 9605 XP_006721804 15 9605 XP_005257179 15 9605 XP_006721803 15 9605 XP_005257176 15 9605 XP_006713373 15 9605 XP_006712787 15 9605 XP_006712786 15 9605 NP_001254479 15 9605>NP_001136098 Length = 274 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQTLKLIQT 9 TQTLKLI+T Sbjct: 54 TQTLKLIET 62>NP_000360 Length = 764 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQTLKLIQT 9 TQTLKLI+T Sbjct: 54 TQTLKLIET 62>NP_001018046 Length = 253 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQTLKLIQT 9 TQTLKLI+T Sbjct: 54 TQTLKLIET 62>XP_005268096 Length = 253 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQTLKLIQT 9 TQTLKLI+T Sbjct: 54 TQTLKLIET 62>XP_006720308 Length = 274 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQTLKLIQT 9 TQTLKLI+T Sbjct: 54 TQTLKLIET 62>XP_005268094 Length = 764 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TQTLKLIQT 9 TQTLKLI+T Sbjct: 54 TQTLKLIET 62>NP_000375 Length = 4563 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TQTLKLIQT 9 TQTLKL T Sbjct: 283 TQTLKLEDT 291>NP_060862 Length = 2104 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TQTLKLIQT 9 T TLKLIQ+ Sbjct: 1939 TFTLKLIQS 1947>XP_005263172 Length = 2104 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 TQTLKLIQT 9 T TLKLIQ+ Sbjct: 1939 TFTLKLIQS 1947>NP_056312 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TQTLKLIQ 8 TQT+KL++ Sbjct: 383 TQTMKLLK 390>NP_004704 Length = 1076 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 QTLK +QT Sbjct: 507 QTLKEVQT 514>NP_001273416 Length = 494 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TQTLKLIQ 8 TQT+KL++ Sbjct: 322 TQTMKLLK 329>XP_006720531 Length = 415 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TQTLKLIQ 8 TQT+KL++ Sbjct: 243 TQTMKLLK 250>XP_005254344 Length = 556 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TQTLKLIQ 8 TQT+KL++ Sbjct: 384 TQTMKLLK 391>XP_005268258 Length = 847 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 QTLK +QT Sbjct: 278 QTLKEVQT 285>XP_005268257 Length = 862 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 QTLK +QT Sbjct: 293 QTLKEVQT 300>XP_005268256 Length = 1055 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 QTLK +QT Sbjct: 507 QTLKEVQT 514>NP_001180462 Length = 752 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TQTLKL 6 TQTLKL Sbjct: 624 TQTLKL 629>NP_003148 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TQTLKL 6 TQTLKL Sbjct: 713 TQTLKL 718>NP_001243779 Length = 34350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLKLIQT 9 TLK++QT Sbjct: 7158 TLKILQT 7164>NP_596869 Length = 33423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLKLIQT 9 TLK++QT Sbjct: 6231 TLKILQT 6237>NP_055495 Length = 2235 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TQTLKLIQ 8 T TLKL+Q Sbjct: 300 TWTLKLLQ 307>NP_659473 Length = 955 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 475 QNMKLLQT 482>NP_001186094 Length = 955 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 475 QNMKLLQT 482>XP_006722261 Length = 2092 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TQTLKLIQ 8 T TLKL+Q Sbjct: 157 TWTLKLLQ 164>XP_005258130 Length = 2234 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TQTLKLIQ 8 T TLKL+Q Sbjct: 300 TWTLKLLQ 307>XP_005257183 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 67 QNMKLLQT 74>XP_005257182 Length = 648 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 168 QNMKLLQT 175>XP_006721807 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 476 QNMKLLQT 483>XP_006721806 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 476 QNMKLLQT 483>XP_006721805 Length = 874 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 476 QNMKLLQT 483>XP_006721804 Length = 908 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 428 QNMKLLQT 435>XP_005257179 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 433 QNMKLLQT 440>XP_006721803 Length = 956 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 476 QNMKLLQT 483>XP_005257176 Length = 956 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QTLKLIQT 9 Q +KL+QT Sbjct: 476 QNMKLLQT 483>XP_006713373 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TQTLKL 6 TQTLKL Sbjct: 667 TQTLKL 672>XP_006712787 Length = 33978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLKLIQT 9 TLK++QT Sbjct: 7159 TLKILQT 7165>XP_006712786 Length = 35484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLKLIQT 9 TLK++QT Sbjct: 7159 TLKILQT 7165>NP_001254479 Length = 35991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TLKLIQT 9 TLK++QT Sbjct: 7475 TLKILQT 7481Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.123 0.289 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 346,948 Number of extensions: 557 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |