Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003626 17 4312 XP_005270313 17 4312 XP_005270312 17 4312 XP_006718109 17 4312 NP_000101 16 5631 XP_006710460 16 5631 XP_005270619 16 5631 NP_055863 16 7355 NP_116213 16 7355 NP_001135918 16 7355 NP_065208 16 7355 XP_006719359 16 7355 XP_006719358 16 7355 XP_005253915 16 7355 XP_005273533 16 7355 XP_005263884 16 7355 XP_006712870 16 7355 NP_065210 16 7355 NP_065209 16 7355 NP_000028 16 7355 NP_005682 15 9605 NP_064693 15 9605 NP_000187 15 9605 NP_001243838 15 9605 NP_079119 15 9605 NP_001131136 15 9605 NP_057322 15 9605 XP_006719513 15 9605 XP_005253348 15 9605 XP_005253347 15 9605 XP_006719088 15 9605 XP_005253346 15 9605 XP_005253344 15 9605 XP_005253345 15 9605 XP_005253343 15 9605 XP_005253341 15 9605>NP_003626 Length = 883 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TPLALRAV 8 TPLALR++ Sbjct: 739 TPLALRSL 746>XP_005270313 Length = 509 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TPLALRAV 8 TPLALR++ Sbjct: 365 TPLALRSL 372>XP_005270312 Length = 815 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TPLALRAV 8 TPLALR++ Sbjct: 739 TPLALRSL 746>XP_006718109 Length = 821 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TPLALRAV 8 TPLALR++ Sbjct: 677 TPLALRSL 684>NP_000101 Length = 1025 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+ALRAV Sbjct: 772 PIALRAV 778>XP_006710460 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+ALRAV Sbjct: 772 PIALRAV 778>XP_005270619 Length = 953 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+ALRAV Sbjct: 700 PIALRAV 706>NP_055863 Length = 1923 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL AVL Sbjct: 1440 PLALPAVL 1447>NP_116213 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TPLALRAV 8 TP A+RAV Sbjct: 36 TPAAVRAV 43>NP_001135918 Length = 1897 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TPLALR 6 TPLALR Sbjct: 1421 TPLALR 1426>NP_065208 Length = 1856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TPLALR 6 TPLALR Sbjct: 1380 TPLALR 1385>XP_006719359 Length = 1966 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL AVL Sbjct: 1483 PLALPAVL 1490>XP_006719358 Length = 1966 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL AVL Sbjct: 1483 PLALPAVL 1490>XP_005253915 Length = 1966 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL AVL Sbjct: 1483 PLALPAVL 1490>XP_005273533 Length = 1921 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TPLALR 6 TPLALR Sbjct: 1421 TPLALR 1426>XP_005263884 Length = 554 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TPLALRAV 8 TP A+RAV Sbjct: 36 TPAAVRAV 43>XP_006712870 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TPLALRAV 8 TP A+RAV Sbjct: 36 TPAAVRAV 43>NP_065210 Length = 1719 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TPLALR 6 TPLALR Sbjct: 1380 TPLALR 1385>NP_065209 Length = 1881 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TPLALR 6 TPLALR Sbjct: 1380 TPLALR 1385>NP_000028 Length = 1880 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TPLALR 6 TPLALR Sbjct: 1380 TPLALR 1385>NP_005682 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>NP_064693 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>NP_000187 Length = 405 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 P+A RAVL Sbjct: 79 PVATRAVL 86>NP_001243838 Length = 228 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PL+LRA L Sbjct: 90 PLSLRAFL 97>NP_079119 Length = 286 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PL+LRA L Sbjct: 148 PLSLRAFL 155>NP_001131136 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL A+L Sbjct: 200 PLALDAIL 207>NP_057322 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL A+L Sbjct: 200 PLALDAIL 207>XP_006719513 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PLALRAVL 9 PLAL A+L Sbjct: 153 PLALDAIL 160>XP_005253348 Length = 1229 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253347 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_006719088 Length = 1536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253346 Length = 1536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253344 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253345 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253343 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253341 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 PLALRAV 8 P+A+RAV Sbjct: 252 PIAMRAV 258Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.140 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 382,692 Number of extensions: 395 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |