Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 19 665 NP_001091680 19 665 NP_001091679 19 665 XP_006713048 19 665 XP_006713047 19 665 XP_006713046 19 665 XP_005264943 19 665 NP_733762 17 4312 NP_110409 17 4312 XP_006714565 17 4312 XP_006713860 17 4312 XP_006713859 17 4312 XP_005247910 17 4312 XP_005247909 17 4312 XP_005260474 16 5631 NP_057088 16 5631 NP_006293 16 7355 NP_001139630 16 7355 NP_001277114 16 7355 NP_068375 16 7355 NP_002194 16 7355 NP_079408 15 9605 XP_006714089 15 9605 XP_005262715 15 9605>NP_001895 Length = 781 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 289 TNVKFLAIT 297>NP_001091680 Length = 781 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 289 TNVKFLAIT 297>NP_001091679 Length = 781 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 289 TNVKFLAIT 297>XP_006713048 Length = 720 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 289 TNVKFLAIT 297>XP_006713047 Length = 774 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 282 TNVKFLAIT 290>XP_006713046 Length = 774 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 282 TNVKFLAIT 290>XP_005264943 Length = 781 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TNV FLAIT Sbjct: 289 TNVKFLAIT 297>NP_733762 Length = 982 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NVNFLAIT 9 N NFLA+T Sbjct: 249 NWNFLAVT 256>NP_110409 Length = 538 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TN+ FLA+T Sbjct: 282 TNLYFLALT 290>XP_006714565 Length = 565 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 TN+ FLA+T Sbjct: 281 TNLYFLALT 289>XP_006713860 Length = 914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NVNFLAIT 9 N NFLA+T Sbjct: 277 NWNFLAVT 284>XP_006713859 Length = 966 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NVNFLAIT 9 N NFLA+T Sbjct: 277 NWNFLAVT 284>XP_005247910 Length = 982 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NVNFLAIT 9 N NFLA+T Sbjct: 249 NWNFLAVT 256>XP_005247909 Length = 1010 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NVNFLAIT 9 N NFLA+T Sbjct: 277 NWNFLAVT 284>XP_005260474 Length = 437 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TNVNFL 6 TN+NFL Sbjct: 97 TNINFL 102>NP_057088 Length = 437 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TNVNFL 6 TN+NFL Sbjct: 97 TNINFL 102>NP_006293 Length = 837 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NVNFLAI 8 NVN+LA+ Sbjct: 757 NVNYLAL 763>NP_001139630 Length = 731 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NVNFLAI 8 NVN+LA+ Sbjct: 651 NVNYLAL 657>NP_001277114 Length = 931 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NVNFLAI 8 N+NF+AI Sbjct: 141 NLNFMAI 147>NP_068375 Length = 941 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 NVNFLAI 8 N+NF+AI Sbjct: 151 NLNFMAI 157>NP_002194 Length = 1181 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TNVNFLAIT 9 TN+NF I+ Sbjct: 944 TNINFYEIS 952>NP_079408 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 T+ N+LA+T Sbjct: 24 TSGNYLAVT 32>XP_006714089 Length = 1281 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 T+ N+LA+T Sbjct: 24 TSGNYLAVT 32>XP_005262715 Length = 1320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TNVNFLAIT 9 T+ N+LA+T Sbjct: 24 TSGNYLAVT 32Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 324,259 Number of extensions: 283 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |