Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 18 1135 NP_001258765 17 2528 NP_001156795 17 2528 NP_296375 17 2528 NP_001156794 17 2528 NP_001156793 17 2528 NP_001258764 17 2528 NP_001188 17 4312 NP_060719 16 7355 NP_001258968 16 7355 NP_001011649 16 7355 NP_002411 16 7355 NP_001238953 16 7355 NP_001238949 16 7355 NP_001273409 16 7355 NP_055598 16 7355 NP_001120676 16 7355 NP_001273197 16 7355 NP_001273196 16 7355 NP_001258547 16 7355 NP_955389 16 7355 NP_060077 16 7355 NP_001273408 16 7355 NP_001273198 16 7355 NP_001273199 16 7355 NP_001120678 16 7355 XP_006725628 16 7355 XP_006725627 16 7355 XP_005259070 16 7355 XP_006720851 16 7355 XP_005254865 16 7355 XP_006717248 16 7355 XP_006717247 16 7355 XP_006717246 16 7355 XP_006717245 16 7355 XP_006717244 16 7355 XP_006717243 16 7355 XP_006717242 16 7355 NP_001120677 16 7355 NP_002125 16 7355 NP_733762 15 9605 XP_006713860 15 9605 XP_006713859 15 9605 XP_005247910 15 9605 XP_005247909 15 9605>NP_055365 Length = 1032 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLSE Sbjct: 211 MRLAQLSE 218>NP_001258765 Length = 630 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLS+ Sbjct: 199 MRLAQLSQ 206>NP_001156795 Length = 618 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLS+ Sbjct: 187 MRLAQLSQ 194>NP_296375 Length = 630 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLS+ Sbjct: 199 MRLAQLSQ 206>NP_001156794 Length = 649 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLS+ Sbjct: 187 MRLAQLSQ 194>NP_001156793 Length = 696 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLS+ Sbjct: 234 MRLAQLSQ 241>NP_001258764 Length = 630 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MRLAQLSE 9 MRLAQLS+ Sbjct: 199 MRLAQLSQ 206>NP_001188 Length = 160 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 RLAQLSE Sbjct: 76 RLAQLSE 82>NP_060719 Length = 1893 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1842 TMKLLQLSK 1850>NP_001258968 Length = 1663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1612 TMKLLQLSK 1620>NP_001011649 Length = 1814 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1763 TMKLLQLSK 1771>NP_002411 Length = 1603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 +RLAQL E Sbjct: 1215 LRLAQLEE 1222>NP_001238953 Length = 1625 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 +RLAQL E Sbjct: 1237 LRLAQLEE 1244>NP_001238949 Length = 1642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 +RLAQL E Sbjct: 1254 LRLAQLEE 1261>NP_001273409 Length = 834 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 122 RIAQLSE 128>NP_055598 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 311 RIAQLSE 317>NP_001120676 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>NP_001273197 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>NP_001273196 Length = 370 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 82 MRMADLSE 89>NP_001258547 Length = 780 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TMRLAQL 7 T+RLAQL Sbjct: 703 TLRLAQL 709>NP_955389 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 311 RIAQLSE 317>NP_060077 Length = 782 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TMRLAQL 7 T+RLAQL Sbjct: 705 TLRLAQL 711>NP_001273408 Length = 834 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 122 RIAQLSE 128>NP_001273198 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>NP_001273199 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>NP_001120678 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>XP_006725628 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 311 RIAQLSE 317>XP_006725627 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 311 RIAQLSE 317>XP_005259070 Length = 781 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TMRLAQL 7 T+RLAQL Sbjct: 704 TLRLAQL 710>XP_006720851 Length = 834 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 122 RIAQLSE 128>XP_005254865 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 R+AQLSE Sbjct: 311 RIAQLSE 317>XP_006717248 Length = 1664 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1613 TMKLLQLSK 1621>XP_006717247 Length = 1670 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1613 TMKLLQLSK 1621>XP_006717246 Length = 1820 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1763 TMKLLQLSK 1771>XP_006717245 Length = 1861 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1810 TMKLLQLSK 1818>XP_006717244 Length = 1867 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1810 TMKLLQLSK 1818>XP_006717243 Length = 1889 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1832 TMKLLQLSK 1840>XP_006717242 Length = 1898 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMRLAQLSE 9 TM+L QLS+ Sbjct: 1841 TMKLLQLSK 1849>NP_001120677 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>NP_002125 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRLAQLSE 9 MR+A LSE Sbjct: 28 MRMADLSE 35>NP_733762 Length = 982 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 +LAQLSE Sbjct: 97 KLAQLSE 103>XP_006713860 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 +LAQLSE Sbjct: 125 KLAQLSE 131>XP_006713859 Length = 966 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 +LAQLSE Sbjct: 125 KLAQLSE 131>XP_005247910 Length = 982 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 +LAQLSE Sbjct: 97 KLAQLSE 103>XP_005247909 Length = 1010 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RLAQLSE 9 +LAQLSE Sbjct: 125 KLAQLSE 131Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.119 0.273 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 230,046 Number of extensions: 198 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |