Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1135 XP_006716142 18 1135 XP_005250088 18 1135 XP_006716141 18 1135 XP_005250085 18 1135 XP_006716140 18 1135 XP_005250084 18 1135 XP_005250083 18 1135 XP_005250082 18 1135 NP_001035521 17 4312 NP_001073918 16 5631 XP_006718416 16 5631 XP_006718415 16 5631 XP_006718414 16 5631 XP_005253234 16 5631 XP_006718412 16 5631 XP_005253231 16 5631 XP_006717743 16 5631 NP_001129628 16 7355 NP_055725 16 7355 NP_065073 16 7355 XP_006715582 16 7355 NP_001141 15 9605 NP_689725 15 9605 NP_055061 15 9605 NP_689540 15 9605 XP_006724446 15 9605 XP_006724216 15 9605 XP_006724215 15 9605 XP_006724214 15 9605 XP_006724213 15 9605 XP_006724212 15 9605 XP_005254949 15 9605 XP_006720086 15 9605 XP_006720085 15 9605 XP_006720084 15 9605>NP_733751 Length = 4911 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2491 TMPSQERFL 2499>XP_006716142 Length = 4927 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>XP_005250088 Length = 4928 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>XP_006716141 Length = 4959 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>XP_005250085 Length = 4979 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>XP_006716140 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>XP_005250084 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>XP_005250083 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2507 TMPSQERFL 2515>XP_005250082 Length = 4983 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TM SQERFL Sbjct: 2508 TMPSQERFL 2516>NP_001035521 Length = 106 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSQERFL 9 +SQERFL Sbjct: 79 ISQERFL 85>NP_001073918 Length = 1060 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TMLSQER 7 T+LSQER Sbjct: 318 TLLSQER 324>XP_006718416 Length = 784 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TMLSQ++ L Sbjct: 762 TMLSQDQLL 770>XP_006718415 Length = 839 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TMLSQ++ L Sbjct: 817 TMLSQDQLL 825>XP_006718414 Length = 850 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TMLSQ++ L Sbjct: 828 TMLSQDQLL 836>XP_005253234 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TMLSQ++ L Sbjct: 894 TMLSQDQLL 902>XP_006718412 Length = 927 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TMLSQ++ L Sbjct: 905 TMLSQDQLL 913>XP_005253231 Length = 977 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TMLSQERFL 9 TMLSQ++ L Sbjct: 955 TMLSQDQLL 963>XP_006717743 Length = 1090 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TMLSQER 7 T+LSQER Sbjct: 348 TLLSQER 354>NP_001129628 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSQERFL 9 LSQ+RFL Sbjct: 409 LSQKRFL 415>NP_055725 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSQERFL 9 LSQ+RFL Sbjct: 409 LSQKRFL 415>NP_065073 Length = 2177 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLSQERFL 9 +LS+ERF+ Sbjct: 75 LLSEERFV 82>XP_006715582 Length = 2106 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLSQERFL 9 +LS+ERF+ Sbjct: 4 LLSEERFV 11>NP_001141 Length = 967 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LSQERFL 9 LSQE FL Sbjct: 561 LSQEHFL 567>NP_689725 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TMLSQE 6 TMLSQE Sbjct: 219 TMLSQE 224>NP_055061 Length = 3014 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LSQERFL 9 +SQE+FL Sbjct: 1214 MSQEKFL 1220>NP_689540 Length = 723 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TMLSQERFL 9 T SQ+RFL Sbjct: 546 THYSQDRFL 554>XP_006724446 Length = 3019 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LSQERFL 9 +SQE+FL Sbjct: 1214 MSQEKFL 1220>XP_006724216 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TMLSQE 6 TMLSQE Sbjct: 219 TMLSQE 224>XP_006724215 Length = 476 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TMLSQE 6 TMLSQE Sbjct: 88 TMLSQE 93>XP_006724214 Length = 494 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TMLSQE 6 TMLSQE Sbjct: 106 TMLSQE 111>XP_006724213 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TMLSQE 6 TMLSQE Sbjct: 166 TMLSQE 171>XP_006724212 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TMLSQE 6 TMLSQE Sbjct: 219 TMLSQE 224>XP_005254949 Length = 967 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 LSQERFL 9 LSQE FL Sbjct: 561 LSQEHFL 567>XP_006720086 Length = 703 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TMLSQERFL 9 T SQ+RFL Sbjct: 519 THYSQDRFL 527>XP_006720085 Length = 704 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TMLSQERFL 9 T SQ+RFL Sbjct: 520 THYSQDRFL 528>XP_006720084 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TMLSQERFL 9 T SQ+RFL Sbjct: 546 THYSQDRFL 554Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.135 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 394,655 Number of extensions: 369 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |