Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 20 509 NP_001087241 20 509 XP_005265799 20 509 XP_005265798 20 509 XP_005265797 20 509 NP_003560 19 869 NP_002658 17 2528 NP_001274152 17 4312 NP_054858 17 4312 NP_852137 16 5631 NP_612419 16 5631 NP_004320 16 7355 NP_694995 16 7355 NP_001186224 16 7355 XP_006723191 16 7355 NP_001489 15 9605 NP_004247 15 9605 NP_001184044 15 9605>NP_000213 Length = 976 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 MCIIVMIL 9 MCIIVMIL Sbjct: 536 MCIIVMIL 543>NP_001087241 Length = 972 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 MCIIVMIL 9 MCIIVMIL Sbjct: 532 MCIIVMIL 539>XP_005265799 Length = 973 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 MCIIVMIL 9 MCIIVMIL Sbjct: 533 MCIIVMIL 540>XP_005265798 Length = 976 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 MCIIVMIL 9 MCIIVMIL Sbjct: 537 MCIIVMIL 544>XP_005265797 Length = 977 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 MCIIVMIL 9 MCIIVMIL Sbjct: 537 MCIIVMIL 544>NP_003560 Length = 261 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 TMCIIVMIL 9 T+CII++IL Sbjct: 237 TLCIIILIL 245>NP_002658 Length = 52 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MCIIVMIL 9 +CIIVM+L Sbjct: 45 ICIIVMLL 52>NP_001274152 Length = 1791 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TMCIIVMIL 9 ++C+IV IL Sbjct: 785 SLCVIVFIL 793>NP_054858 Length = 1791 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TMCIIVMIL 9 ++C+IV IL Sbjct: 785 SLCVIVFIL 793>NP_852137 Length = 142 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TMCIIVMIL 9 T+C ++MIL Sbjct: 81 TICDLIMIL 89>NP_612419 Length = 175 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TMCIIVMIL 9 T+C ++MIL Sbjct: 81 TICDLIMIL 89>NP_004320 Length = 532 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MCIIVMIL 9 +CII MI+ Sbjct: 162 VCIIAMII 169>NP_694995 Length = 627 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 MCIIVM 7 MCI+VM Sbjct: 95 MCILVM 100>NP_001186224 Length = 640 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 MCIIVM 7 MCI+VM Sbjct: 108 MCILVM 113>XP_006723191 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 MCIIVM 7 MCI+VM Sbjct: 86 MCILVM 91>NP_001489 Length = 637 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TMCIIVMIL 9 T+C IVM L Sbjct: 271 TICPIVMAL 279>NP_004247 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 MCIIVMIL 9 MCII++ + Sbjct: 403 MCIIIIFI 410>NP_001184044 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TMCIIVMIL 9 T+C IVM L Sbjct: 233 TICPIVMAL 241Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.362 0.157 0.492 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 395,081 Number of extensions: 392 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |