Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001013433 19 665 NP_060785 19 665 NP_361014 19 665 NP_000578 17 2528 NP_001185739 17 4312 NP_003618 17 4312 NP_001361 17 4312 XP_005274415 17 4312 XP_005274414 17 4312 XP_006712019 17 4312 NP_001080 16 5631 NP_848599 16 5631 NP_001157164 16 5631 XP_005254427 16 5631 XP_006713081 16 5631 NP_085116 16 7355 NP_000005 16 7355 XP_006719119 16 7355 NP_001108451 15 9605 NP_001108454 15 9605 NP_003713 15 9605 NP_001108450 15 9605 NP_001108452 15 9605 NP_001108453 15 9605 NP_060379 15 9605 NP_060232 15 9605 XP_006725610 15 9605 XP_006725609 15 9605 XP_006725608 15 9605 XP_005254565 15 9605 XP_005254564 15 9605 XP_006720651 15 9605 XP_005247903 15 9605 XP_005247901 15 9605 XP_005247900 15 9605>NP_001013433 Length = 589 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLTGRQSLT 9 TLTG QSLT Sbjct: 458 TLTGHQSLT 466>NP_060785 Length = 627 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLTGRQSLT 9 TLTG QSLT Sbjct: 496 TLTGHQSLT 504>NP_361014 Length = 707 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLTGRQSLT 9 TLTG QSLT Sbjct: 576 TLTGHQSLT 584>NP_000578 Length = 843 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TLTGRQSLT 9 TLTGR S T Sbjct: 756 TLTGRDSCT 764>NP_001185739 Length = 559 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 TLTG QSL Sbjct: 478 TLTGLQSL 485>NP_003618 Length = 559 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 TLTG QSL Sbjct: 478 TLTGLQSL 485>NP_001361 Length = 4158 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TGRQSLT 9 TG+QSLT Sbjct: 2451 TGKQSLT 2457>XP_005274415 Length = 575 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 TLTG QSL Sbjct: 494 TLTGLQSL 501>XP_005274414 Length = 585 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 TLTG QSL Sbjct: 504 TLTGLQSL 511>XP_006712019 Length = 4158 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TGRQSLT 9 TG+QSLT Sbjct: 2451 TGKQSLT 2457>NP_001080 Length = 1704 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LTGRQSLT 9 LTG +SLT Sbjct: 1429 LTGEESLT 1436>NP_848599 Length = 3092 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TGRQSLT 9 +GRQSLT Sbjct: 2261 SGRQSLT 2267>NP_001157164 Length = 381 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TGRQSLT 9 TGRQSL+ Sbjct: 296 TGRQSLS 302>XP_005254427 Length = 381 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TGRQSLT 9 TGRQSL+ Sbjct: 296 TGRQSLS 302>XP_006713081 Length = 3964 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TGRQSLT 9 +GRQSLT Sbjct: 2284 SGRQSLT 2290>NP_085116 Length = 461 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TGRQSLT 9 TGR SLT Sbjct: 364 TGRSSLT 370>NP_000005 Length = 1474 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LTGRQS 7 LTGRQS Sbjct: 335 LTGRQS 340>XP_006719119 Length = 1512 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LTGRQS 7 LTGRQS Sbjct: 335 LTGRQS 340>NP_001108451 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 280 ITGRQSV 286>NP_001108454 Length = 393 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 186 ITGRQSV 192>NP_003713 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 280 ITGRQSV 286>NP_001108450 Length = 555 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 280 ITGRQSV 286>NP_001108452 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 186 ITGRQSV 192>NP_001108453 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 186 ITGRQSV 192>NP_060379 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 TLT RQSL Sbjct: 43 TLTIRQSL 50>NP_060232 Length = 777 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 427 TITGFQSL 434>XP_006725610 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 179 TITGFQSL 186>XP_006725609 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 427 TITGFQSL 434>XP_006725608 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 427 TITGFQSL 434>XP_005254565 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 179 TITGFQSL 186>XP_005254564 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 427 TITGFQSL 434>XP_006720651 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLTGRQSL 8 T+TG QSL Sbjct: 427 TITGFQSL 434>XP_005247903 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 280 ITGRQSV 286>XP_005247901 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 263 ITGRQSV 269>XP_005247900 Length = 676 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LTGRQSL 8 +TGRQS+ Sbjct: 280 ITGRQSV 286Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.121 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 412,553 Number of extensions: 426 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |