Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_443200 17 2528 NP_001160070 17 2528 XP_006718824 17 2528 NP_667338 16 7355 NP_001159608 16 7355 NP_001268885 16 7355 NP_443128 16 7355 XP_006713923 16 7355 XP_006713922 16 7355 NP_002560 15 9605 NP_001276753 15 9605 NP_001276752 15 9605 NP_055698 15 9605 NP_001015045 15 9605 NP_001252509 15 9605 NP_001252508 15 9605 NP_001252507 15 9605 XP_005262351 15 9605 XP_005262742 15 9605 XP_005262741 15 9605 XP_006714120 15 9605 XP_005262740 15 9605 XP_005262739 15 9605 XP_005262738 15 9605>NP_443200 Length = 366 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSAYSATQ 9 LSA+SATQ Sbjct: 15 LSAFSATQ 22>NP_001160070 Length = 366 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSAYSATQ 9 LSA+SATQ Sbjct: 15 LSAFSATQ 22>XP_006718824 Length = 366 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSAYSATQ 9 LSA+SATQ Sbjct: 15 LSAFSATQ 22>NP_667338 Length = 1308 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TLSAYSA 7 TLSAY+A Sbjct: 981 TLSAYTA 987>NP_001159608 Length = 1228 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TLSAYSA 7 TLSAY+A Sbjct: 901 TLSAYTA 907>NP_001268885 Length = 3631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 TLSAYSAT 8 TLS Y AT Sbjct: 2670 TLSVYGAT 2677>NP_443128 Length = 3487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 TLSAYSAT 8 TLS Y AT Sbjct: 2672 TLSVYGAT 2679>XP_006713923 Length = 1228 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TLSAYSA 7 TLSAY+A Sbjct: 901 TLSAYTA 907>XP_006713922 Length = 1262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TLSAYSA 7 TLSAY+A Sbjct: 981 TLSAYTA 987>NP_002560 Length = 794 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TLSAYSATQ 9 TLS SATQ Sbjct: 314 TLSISSATQ 322>NP_001276753 Length = 794 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TLSAYSATQ 9 TLS SATQ Sbjct: 314 TLSISSATQ 322>NP_001276752 Length = 794 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TLSAYSATQ 9 TLS SATQ Sbjct: 314 TLSISSATQ 322>NP_055698 Length = 1023 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 396 TLSASSAT 403>NP_001015045 Length = 697 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 70 TLSASSAT 77>NP_001252509 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 42 TLSASSAT 49>NP_001252508 Length = 669 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 70 TLSASSAT 77>NP_001252507 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 56 TLSASSAT 63>XP_005262351 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LSAYSAT 8 L AYSAT Sbjct: 389 LQAYSAT 395>XP_005262742 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 396 TLSASSAT 403>XP_005262741 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 187 TLSASSAT 194>XP_006714120 Length = 834 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 207 TLSASSAT 214>XP_005262740 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 396 TLSASSAT 403>XP_005262739 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 376 TLSASSAT 383>XP_005262738 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TLSAYSAT 8 TLSA SAT Sbjct: 382 TLSASSAT 389Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.296 0.0986 0.231 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 337,251 Number of extensions: 489 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |