Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_055178 18 1935 NP_001264984 18 1935 XP_005266395 18 1935 NP_001243668 17 2528 NP_001243667 17 2528 NP_001243666 17 2528 NP_076939 17 2528 NP_001243669 17 2528 NP_004710 17 3301 XP_006719755 17 3301 XP_005269287 17 3301 NP_078966 17 4312 XP_006721023 16 5631 XP_006721022 16 5631 XP_005271295 16 5631 NP_112227 16 5631 NP_009107 16 7355 NP_115800 16 7355 NP_872344 16 7355 XP_006721535 16 7355 XP_005271758 16 7355 XP_005271756 16 7355 XP_005271757 16 7355 XP_005271755 16 7355 XP_005271754 16 7355 XP_006711995 16 7355 NP_037450 15 9605 NP_060842 15 9605 NP_001006946 15 9605 NP_000848 15 9605 NP_055674 15 9605 NP_004361 15 9605 NP_079105 15 9605 XP_006721678 15 9605 XP_005256948 15 9605 XP_005256947 15 9605 XP_005256946 15 9605 XP_005256945 15 9605 XP_006715397 15 9605 XP_005271086 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLLSSV PR Sbjct: 1590 TLLSSVTPR 1598>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLLSSV PR Sbjct: 1385 TLLSSVTPR 1393>NP_055178 Length = 4579 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LLSSVIPR 9 LLSSV+PR Sbjct: 3217 LLSSVLPR 3224>NP_001264984 Length = 4432 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LLSSVIPR 9 LLSSV+PR Sbjct: 3070 LLSSVLPR 3077>XP_005266395 Length = 4588 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LLSSVIPR 9 LLSSV+PR Sbjct: 3226 LLSSVLPR 3233>NP_001243668 Length = 309 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TLLSSVIP 8 TLLS+VIP Sbjct: 263 TLLSAVIP 270>NP_001243667 Length = 278 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TLLSSVIP 8 TLLS+VIP Sbjct: 232 TLLSAVIP 239>NP_001243666 Length = 386 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TLLSSVIP 8 TLLS+VIP Sbjct: 340 TLLSAVIP 347>NP_076939 Length = 367 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TLLSSVIP 8 TLLS+VIP Sbjct: 321 TLLSAVIP 328>NP_001243669 Length = 296 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 TLLSSVIP 8 TLLS+VIP Sbjct: 250 TLLSAVIP 257>NP_004710 Length = 1463 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSSVIPR 9 L+SSV+PR Sbjct: 260 LISSVLPR 267>XP_006719755 Length = 1418 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSSVIPR 9 L+SSV+PR Sbjct: 215 LISSVLPR 222>XP_005269287 Length = 1527 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLSSVIPR 9 L+SSV+PR Sbjct: 324 LISSVLPR 331>NP_078966 Length = 14507 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 TLLSSVIP 8 T++SSVIP Sbjct: 673 TMVSSVIP 680>XP_006721023 Length = 813 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLSSVIPR 9 LLSS +PR Sbjct: 555 LLSSFVPR 562>XP_006721022 Length = 814 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLSSVIPR 9 LLSS +PR Sbjct: 556 LLSSFVPR 563>XP_005271295 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLSSVIPR 9 LLS V+PR Sbjct: 191 LLSQVLPR 198>NP_112227 Length = 336 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLSSVIPR 9 LLS V+PR Sbjct: 191 LLSQVLPR 198>NP_009107 Length = 140 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 TLLSSVI 7 TLLSSVI Sbjct: 57 TLLSSVI 63>NP_115800 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 +LSSVIP Sbjct: 163 MLSSVIP 169>NP_872344 Length = 512 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLSSVIPR 9 LLS V+PR Sbjct: 392 LLSVVVPR 399>XP_006721535 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLSSVIPR 9 LLS V+PR Sbjct: 196 LLSVVVPR 203>XP_005271758 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271756 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271757 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271755 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_005271754 Length = 345 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 +LSSVIP Sbjct: 163 MLSSVIP 169>XP_006711995 Length = 218 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TLLSSVIPR 9 TLLS +PR Sbjct: 17 TLLSKGVPR 25>NP_037450 Length = 2229 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SSVIPR 9 SSVIPR Sbjct: 37 SSVIPR 42>NP_060842 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 LLSS++P Sbjct: 665 LLSSILP 671>NP_001006946 Length = 233 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 LLSS++P Sbjct: 129 LLSSILP 135>NP_000848 Length = 619 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TLLSSVIP 8 TLL SV+P Sbjct: 392 TLLYSVLP 399>NP_055674 Length = 818 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLL +V+P+ Sbjct: 231 TLLQAVLPQ 239>NP_004361 Length = 3063 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLLSSVIP 8 TLLS ++P Sbjct: 79 TLLSELVP 86>NP_079105 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 TLLSSVIP 8 TLL VIP Sbjct: 310 TLLKQVIP 317>XP_006721678 Length = 692 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLL +V+P+ Sbjct: 231 TLLQAVLPQ 239>XP_005256948 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLL +V+P+ Sbjct: 231 TLLQAVLPQ 239>XP_005256947 Length = 768 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLL +V+P+ Sbjct: 231 TLLQAVLPQ 239>XP_005256946 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLL +V+P+ Sbjct: 231 TLLQAVLPQ 239>XP_005256945 Length = 812 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLLSSVIPR 9 TLL +V+P+ Sbjct: 231 TLLQAVLPQ 239>XP_006715397 Length = 2972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLLSSVIP 8 TLLS ++P Sbjct: 79 TLLSELVP 86>XP_005271086 Length = 768 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LLSSVIP 8 LLSS++P Sbjct: 664 LLSSILP 670Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.135 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 423,180 Number of extensions: 783 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |