Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_036562 17 4312 NP_037513 16 7355 NP_006785 16 7355 XP_005268876 16 7355 NP_006085 15 9605 NP_001072983 15 9605 NP_001157743 15 9605 NP_872584 15 9605 NP_001274731 15 9605 NP_006370 15 9605 NP_001028774 15 9605 NP_001002926 15 9605 NP_003184 15 9605 NP_001274730 15 9605 XP_005273432 15 9605 XP_005273431 15 9605 XP_005250170 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLKISSSHQ 9 TLKISSS+Q Sbjct: 2785 TLKISSSNQ 2793>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLKISSSHQ 9 TLKISSS+Q Sbjct: 2777 TLKISSSNQ 2785>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLKISSSHQ 9 TLKISSS+Q Sbjct: 2738 TLKISSSNQ 2746>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLKISSSHQ 9 TLKISSS+Q Sbjct: 2817 TLKISSSNQ 2825>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLKISSSHQ 9 TLKISSS+Q Sbjct: 2830 TLKISSSNQ 2838>NP_036562 Length = 307 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KISSSHQ 9 KISS+HQ Sbjct: 177 KISSAHQ 183>NP_037513 Length = 1024 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TLKISSSHQ 9 T KIS HQ Sbjct: 287 TFKISIKHQ 295>NP_006785 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 TLKISSSH 8 TLK S SH Sbjct: 180 TLKTSKSH 187>XP_005268876 Length = 777 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TLKISSSHQ 9 T KIS HQ Sbjct: 332 TFKISIKHQ 340>NP_006085 Length = 1091 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLKISSSH 8 +LK+ SSH Sbjct: 236 SLKLKSSH 243>NP_001072983 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TLKISSSHQ 9 TLKI HQ Sbjct: 447 TLKIKYPHQ 455>NP_001157743 Length = 1017 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLKISSSH 8 +LK+ SSH Sbjct: 162 SLKLKSSH 169>NP_872584 Length = 1528 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLKISSSH 8 +LK+ SSH Sbjct: 673 SLKLKSSH 680>NP_001274731 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TLKISSSHQ 9 TLKI HQ Sbjct: 334 TLKIKYPHQ 342>NP_006370 Length = 751 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TLKISSSHQ 9 T+KISS Q Sbjct: 488 TMKISSKKQ 496>NP_001028774 Length = 1379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKISSSH 8 L++SSSH Sbjct: 52 LEVSSSH 58>NP_001002926 Length = 338 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KISSSH 8 K+SSSH Sbjct: 137 KVSSSH 142>NP_003184 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TLKISSSHQ 9 TLKI HQ Sbjct: 447 TLKIKYPHQ 455>NP_001274730 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 TLKISSSHQ 9 TLKI HQ Sbjct: 498 TLKIKYPHQ 506>XP_005273432 Length = 1125 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLKISSSH 8 +LK+ SSH Sbjct: 270 SLKLKSSH 277>XP_005273431 Length = 1528 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TLKISSSH 8 +LK+ SSH Sbjct: 673 SLKLKSSH 680>XP_005250170 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TLKISSSHQ 9 T+KISS Q Sbjct: 430 TMKISSKKQ 438Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.107 0.256 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 530,423 Number of extensions: 790 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |