Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 20 509 NP_116206 17 3301 NP_085046 17 3301 XP_005258838 17 4312 NP_001078949 17 4312 NP_775904 17 4312 NP_001957 16 5631 NP_001159887 16 5631 XP_006713588 16 5631 NP_000525 16 7355 NP_001121615 16 7355 NP_001121616 16 7355 NP_003949 16 7355 NP_898901 16 7355 NP_003769 16 7355 NP_997708 16 7355 XP_006715306 16 7355 XP_006715305 16 7355 XP_006715304 16 7355 XP_005247914 16 7355 XP_006713864 16 7355 XP_006713863 16 7355 XP_006713862 16 7355 XP_005247912 16 7355 XP_006713861 16 7355 XP_005246706 16 7355 XP_005246704 16 7355 NP_001350 15 9605 NP_001243556 15 9605 NP_003948 15 9605 NP_001243558 15 9605 XP_005272702 15 9605 XP_006723741 15 9605 XP_006718441 15 9605 XP_005253275 15 9605 XP_006718438 15 9605 XP_006718437 15 9605 XP_005272419 15 9605 XP_005276177 15 9605 XP_002345622 15 9605 NP_115806 15 9605>NP_003290 Length = 803 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLGRGMTIT 9 TLGRG TIT Sbjct: 240 TLGRGTTIT 248>NP_116206 Length = 728 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TLGRGMT 7 TLGRGM+ Sbjct: 719 TLGRGMS 725>NP_085046 Length = 942 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TLGRGMT 7 TLGRGM+ Sbjct: 933 TLGRGMS 939>XP_005258838 Length = 563 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 275 LGKGFTVT 282>NP_001078949 Length = 162 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LGRGMTI 8 LGRG+T+ Sbjct: 11 LGRGLTV 17>NP_775904 Length = 493 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 261 LGKGFTVT 268>NP_001957 Length = 723 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLGRGMTIT 9 T+GRG+ I+ Sbjct: 307 TMGRGIVIS 315>NP_001159887 Length = 627 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLGRGMTIT 9 T+GRG+ I+ Sbjct: 211 TMGRGIVIS 219>XP_006713588 Length = 515 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TLGRGMTIT 9 T+GRG+ I+ Sbjct: 99 TMGRGIVIS 107>NP_000525 Length = 932 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 137 LGQGTTVT 144>NP_001121615 Length = 893 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 137 LGQGTTVT 144>NP_001121616 Length = 770 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 137 LGQGTTVT 144>NP_003949 Length = 485 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TLGRGMTIT 9 T+GRG +T Sbjct: 39 TVGRGFGVT 47>NP_898901 Length = 448 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TLGRGMTIT 9 T+GRG +T Sbjct: 39 TVGRGFGVT 47>NP_003769 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>NP_997708 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_006715306 Length = 334 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TLGRGMTIT 9 T+GRG +T Sbjct: 39 TVGRGFGVT 47>XP_006715305 Length = 418 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TLGRGMTIT 9 T+GRG +T Sbjct: 39 TVGRGFGVT 47>XP_006715304 Length = 455 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TLGRGMTIT 9 T+GRG +T Sbjct: 39 TVGRGFGVT 47>XP_005247914 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_006713864 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_006713863 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_006713862 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_005247912 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_006713861 Length = 344 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 57 LGKGKTLT 64>XP_005246706 Length = 891 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 137 LGQGTTVT 144>XP_005246704 Length = 932 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LGRGMTIT 9 LG+G T+T Sbjct: 137 LGQGTTVT 144>NP_001350 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LGRGMT 7 LG+GMT Sbjct: 71 LGKGMT 76>NP_001243556 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>NP_003948 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>NP_001243558 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>XP_005272702 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 TLGRGMTIT 9 +LGRG+ T Sbjct: 47 SLGRGLATT 55>XP_006723741 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TLGRGM 6 TLGRG+ Sbjct: 38 TLGRGL 43>XP_006718441 Length = 690 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>XP_005253275 Length = 720 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>XP_006718438 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>XP_006718437 Length = 758 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 24 TLGKGQT 30>XP_005272419 Length = 216 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TLGRGMTI 8 TLGRG + Sbjct: 207 TLGRGFLV 214>XP_005276177 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TLGRGM 6 TLGRG+ Sbjct: 38 TLGRGL 43>XP_002345622 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TLGRGM 6 TLGRG+ Sbjct: 33 TLGRGL 38>NP_115806 Length = 778 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TLGRGMT 7 TLG+G T Sbjct: 39 TLGKGQT 45Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 486,994 Number of extensions: 462 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |