Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 18 1135 NP_004561 18 1135 NP_001275703 18 1135 XP_005253450 18 1135 XP_006719151 18 1135 NP_001275658 17 4312 NP_001275660 17 4312 NP_004929 17 4312 NP_001275659 17 4312 XP_005251814 17 4312 XP_006717051 17 4312 NP_065996 15 9605 XP_005270063 15 9605 XP_005270062 15 9605 XP_005270061 15 9605>NP_001275701 Length = 1486 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLAQMSAIN 9 TLAQMSAI+ Sbjct: 1216 TLAQMSAIS 1224>NP_004561 Length = 1445 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLAQMSAIN 9 TLAQMSAI+ Sbjct: 1175 TLAQMSAIS 1183>NP_001275703 Length = 1264 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLAQMSAIN 9 TLAQMSAI+ Sbjct: 994 TLAQMSAIS 1002>XP_005253450 Length = 1486 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLAQMSAIN 9 TLAQMSAI+ Sbjct: 1216 TLAQMSAIS 1224>XP_006719151 Length = 1486 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TLAQMSAIN 9 TLAQMSAI+ Sbjct: 1216 TLAQMSAIS 1224>NP_001275658 Length = 1430 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TLAQMSAIN 9 TLA +SA+N Sbjct: 225 TLANVSAVN 233>NP_001275660 Length = 1430 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TLAQMSAIN 9 TLA +SA+N Sbjct: 225 TLANVSAVN 233>NP_004929 Length = 1430 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TLAQMSAIN 9 TLA +SA+N Sbjct: 225 TLANVSAVN 233>NP_001275659 Length = 1430 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TLAQMSAIN 9 TLA +SA+N Sbjct: 225 TLANVSAVN 233>XP_005251814 Length = 839 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TLAQMSAIN 9 TLA +SA+N Sbjct: 225 TLANVSAVN 233>XP_006717051 Length = 1285 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TLAQMSAIN 9 TLA +SA+N Sbjct: 80 TLANVSAVN 88>NP_065996 Length = 3184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAQMSAIN 9 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_005270063 Length = 2005 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAQMSAIN 9 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_005270062 Length = 3184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAQMSAIN 9 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_005270061 Length = 3184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAQMSAIN 9 L Q+SAIN Sbjct: 591 LEQLSAIN 598Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.112 0.259 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 177,787 Number of extensions: 151 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |