Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 869 NP_671714 19 869 XP_006715890 19 869 XP_005250160 19 869 XP_005250159 19 869 NP_055906 16 5631 XP_005267508 16 5631 NP_001159743 16 7355 NP_001273721 16 7355 NP_542119 15 9605 NP_077313 15 9605 NP_149114 15 9605 XP_005253583 15 9605 XP_005253581 15 9605 XP_005253580 15 9605 XP_006719225 15 9605 XP_005253579 15 9605 XP_005253577 15 9605 XP_005253576 15 9605>NP_005742 Length = 3907 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLALFARMG 9 TLAL ARMG Sbjct: 3736 TLALLARMG 3744>NP_671714 Length = 3899 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLALFARMG 9 TLAL ARMG Sbjct: 3728 TLALLARMG 3736>XP_006715890 Length = 3860 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLALFARMG 9 TLAL ARMG Sbjct: 3689 TLALLARMG 3697>XP_005250160 Length = 3939 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLALFARMG 9 TLAL ARMG Sbjct: 3768 TLALLARMG 3776>XP_005250159 Length = 3952 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TLALFARMG 9 TLAL ARMG Sbjct: 3781 TLALLARMG 3789>NP_055906 Length = 1720 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ALFARMG 9 ALFA+MG Sbjct: 1684 ALFAQMG 1690>XP_005267508 Length = 1773 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ALFARMG 9 ALFA+MG Sbjct: 1737 ALFAQMG 1743>NP_001159743 Length = 1277 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TLALFARMG 9 TLA F +MG Sbjct: 104 TLASFRKMG 112>NP_001273721 Length = 1339 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TLALFARMG 9 TLA F +MG Sbjct: 166 TLASFRKMG 174>NP_542119 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 LFARMG 9 +FARMG Sbjct: 27 MFARMG 32>NP_077313 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LALFARMG 9 L+LF++MG Sbjct: 86 LSLFSQMG 93>NP_149114 Length = 608 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 585 IPLFSRMG 592>XP_005253583 Length = 545 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 522 IPLFSRMG 529>XP_005253581 Length = 521 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 498 IPLFSRMG 505>XP_005253580 Length = 545 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 522 IPLFSRMG 529>XP_006719225 Length = 545 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 522 IPLFSRMG 529>XP_005253579 Length = 610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 587 IPLFSRMG 594>XP_005253577 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 626 IPLFSRMG 633>XP_005253576 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LALFARMG 9 + LF+RMG Sbjct: 626 IPLFSRMG 633Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.145 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 261,752 Number of extensions: 315 Number of successful extensions: 19 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 19 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |