Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001166028 17 4312 NP_005886 17 4312 XP_006719803 17 4312 XP_005266222 17 4312 XP_005266221 17 4312 XP_006719802 17 4312 XP_006719801 17 4312 XP_006719800 17 4312 XP_006719799 17 4312 XP_005266219 17 4312 NP_057652 16 7355 NP_064714 16 7355 XP_005245479 16 7355 NP_068755 16 7355 NP_003283 15 9605 NP_001028732 15 9605 NP_036292 15 9605 NP_001265645 15 9605 NP_001243467 15 9605 NP_570722 15 9605 NP_001028731 15 9605 XP_005266987 15 9605 XP_006715521 15 9605 XP_005245528 15 9605 NP_542777 15 9605>NP_001166028 Length = 1134 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 179 TKTRLFST 186>NP_005886 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 179 TKTRLFST 186>XP_006719803 Length = 1407 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 88 TKTRLFST 95>XP_005266222 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 139 TKTRLFST 146>XP_005266221 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 139 TKTRLFST 146>XP_006719802 Length = 1458 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 139 TKTRLFST 146>XP_006719801 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 179 TKTRLFST 186>XP_006719800 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 179 TKTRLFST 186>XP_006719799 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 179 TKTRLFST 186>XP_005266219 Length = 1498 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 TKT +FST Sbjct: 179 TKTRLFST 186>NP_057652 Length = 469 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TAIFSTT 9 +AIFSTT Sbjct: 232 SAIFSTT 238>NP_064714 Length = 1791 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T TAIF+T Sbjct: 172 TTTAIFTT 179>XP_005245479 Length = 1791 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T TAIF+T Sbjct: 172 TTTAIFTT 179>NP_068755 Length = 827 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T TAIF+T Sbjct: 172 TTTAIFTT 179>NP_003283 Length = 2363 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TKTAIFST 8 T TA+F T Sbjct: 1811 TSTAVFGT 1818>NP_001028732 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKTAIF 6 TKTA+F Sbjct: 13 TKTAVF 18>NP_036292 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T+TA+F T Sbjct: 92 TQTAVFRT 99>NP_001265645 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T+TA+F T Sbjct: 92 TQTAVFRT 99>NP_001243467 Length = 165 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TKTAIFSTT 9 T A+FSTT Sbjct: 60 TIQAVFSTT 68>NP_570722 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKTAIF 6 TKTA+F Sbjct: 13 TKTAVF 18>NP_001028731 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TKTAIF 6 TKTA+F Sbjct: 13 TKTAVF 18>XP_005266987 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T+TA+F T Sbjct: 92 TQTAVFRT 99>XP_006715521 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TKTAIFST 8 T+TA+F T Sbjct: 92 TQTAVFRT 99>XP_005245528 Length = 2439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 TKTAIFST 8 T TA+F T Sbjct: 1887 TSTAVFGT 1894>NP_542777 Length = 165 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TKTAIFSTT 9 T A+FSTT Sbjct: 60 TIQAVFSTT 68Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.111 0.274 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 309,812 Number of extensions: 550 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |