Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000236 20 299 NP_001120972 20 299 XP_006716054 20 299 XP_006716053 20 299 XP_006716052 20 299 XP_006716051 20 299 NP_003907 16 7355 NP_001259000 16 7355 NP_001034658 16 7355 NP_001274 16 7355 XP_005274671 16 7355 XP_005274669 16 7355 NP_852610 15 9605 NP_115903 15 9605 NP_001073878 15 9605 NP_001229609 15 9605 NP_001239586 15 9605 XP_006726603 15 9605 XP_006725215 15 9605 XP_005260634 15 9605 XP_006722664 15 9605 XP_006719239 15 9605 XP_006719237 15 9605 XP_006713052 15 9605 XP_006713051 15 9605>NP_000236 Length = 1390 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TKAFFMLD 8 TKAFFMLD Sbjct: 817 TKAFFMLD 824>NP_001120972 Length = 1408 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TKAFFMLD 8 TKAFFMLD Sbjct: 835 TKAFFMLD 842>XP_006716054 Length = 960 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TKAFFMLD 8 TKAFFMLD Sbjct: 387 TKAFFMLD 394>XP_006716053 Length = 960 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TKAFFMLD 8 TKAFFMLD Sbjct: 387 TKAFFMLD 394>XP_006716052 Length = 1409 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TKAFFMLD 8 TKAFFMLD Sbjct: 836 TKAFFMLD 843>XP_006716051 Length = 1427 Score = 20.4 bits (41), Expect = 299 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TKAFFMLD 8 TKAFFMLD Sbjct: 854 TKAFFMLD 861>NP_003907 Length = 157 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KAFFMLD 8 KA+F+LD Sbjct: 108 KAYFILD 114>NP_001259000 Length = 160 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KAFFMLD 8 KA+F+LD Sbjct: 108 KAYFILD 114>NP_001034658 Length = 154 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KAFFMLD 8 KA+F+LD Sbjct: 109 KAYFILD 115>NP_001274 Length = 158 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KAFFMLD 8 KA+F+LD Sbjct: 109 KAYFILD 115>XP_005274671 Length = 195 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KAFFMLD 8 KA+F+LD Sbjct: 150 KAYFILD 156>XP_005274669 Length = 202 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KAFFMLD 8 KA+F+LD Sbjct: 150 KAYFILD 156>NP_852610 Length = 125 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 T+AFF+L Sbjct: 80 TQAFFLL 86>NP_115903 Length = 121 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 T+AFF+L Sbjct: 76 TQAFFLL 82>NP_001073878 Length = 864 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +K+FFML Sbjct: 179 SKSFFML 185>NP_001229609 Length = 1252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +K+FFML Sbjct: 186 SKSFFML 192>NP_001239586 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KAFFMLDR 9 KAF+ +DR Sbjct: 288 KAFWRMDR 295>XP_006726603 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +KAFF+L Sbjct: 812 SKAFFLL 818>XP_006725215 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +KAFF+L Sbjct: 812 SKAFFLL 818>XP_005260634 Length = 121 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 T+AFF+L Sbjct: 76 TQAFFLL 82>XP_006722664 Length = 1248 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +K+FFML Sbjct: 210 SKSFFML 216>XP_006719239 Length = 1066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +KAFF+L Sbjct: 1030 SKAFFLL 1036>XP_006719237 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TKAFFML 7 +KAFF+L Sbjct: 812 SKAFFLL 818>XP_006713052 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KAFFMLDR 9 KAF+ +DR Sbjct: 288 KAFWRMDR 295>XP_006713051 Length = 618 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KAFFMLDR 9 KAF+ +DR Sbjct: 288 KAFWRMDR 295Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.148 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 421,674 Number of extensions: 527 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |