Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 509 NP_001035957 20 509 XP_006721991 20 509 XP_006721990 20 509 XP_006721989 20 509 XP_005258041 20 509 XP_006721988 20 509 XP_006721987 20 509 XP_006721986 20 509 XP_005258040 20 509 XP_006721985 20 509 NP_006840 17 4312 NP_001277114 16 5631 NP_068375 16 5631 NP_002431 16 7355 NP_001153239 16 7355 NP_002106 16 7355 NP_054757 16 7355 NP_056052 16 7355 NP_001074003 16 7355 XP_005254452 16 7355 XP_005254451 16 7355 XP_006715771 16 7355 XP_006715770 16 7355 XP_006715769 16 7355 NP_777557 16 7355 NP_000431 15 9605 NP_006436 15 9605 NP_569733 15 9605 NP_904324 15 9605 NP_775922 15 9605 XP_006719745 15 9605 XP_006719744 15 9605 XP_005254044 15 9605 NP_061720 15 9605>NP_000258 Length = 2818 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 940 TISKFFDSQ 948>NP_001035957 Length = 2839 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 940 TISKFFDSQ 948>XP_006721991 Length = 1632 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 950 TISKFFDSQ 958>XP_006721990 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 950 TISKFFDSQ 958>XP_006721989 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 950 TISKFFDSQ 958>XP_005258041 Length = 2836 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 940 TISKFFDSQ 948>XP_006721988 Length = 2846 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 950 TISKFFDSQ 958>XP_006721987 Length = 2849 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 950 TISKFFDSQ 958>XP_006721986 Length = 2854 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 937 TISKFFDSQ 945>XP_005258040 Length = 2857 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 940 TISKFFDSQ 948>XP_006721985 Length = 2867 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TISKFLDSQ 9 TISKF DSQ Sbjct: 950 TISKFFDSQ 958>NP_006840 Length = 525 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 T SKFLD+ Sbjct: 486 TFSKFLDN 493>NP_001277114 Length = 931 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ISKFLDSQ 9 I KFLD+Q Sbjct: 414 IRKFLDAQ 421>NP_068375 Length = 941 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ISKFLDSQ 9 I KFLD+Q Sbjct: 424 IRKFLDAQ 431>NP_002431 Length = 936 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ISKFLDSQ 9 IS+FLD++ Sbjct: 389 ISRFLDTE 396>NP_001153239 Length = 419 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ISKFLDS 8 ++KFLDS Sbjct: 48 VAKFLDS 54>NP_002106 Length = 923 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ISKFLDSQ 9 +S+FLD+Q Sbjct: 147 LSEFLDAQ 154>NP_054757 Length = 419 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ISKFLDS 8 ++KFLDS Sbjct: 48 VAKFLDS 54>NP_056052 Length = 1354 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKFLDS 8 SKFLDS Sbjct: 1132 SKFLDS 1137>NP_001074003 Length = 2214 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISKFLDSQ 9 I KF+D+Q Sbjct: 2025 IKKFIDTQ 2032>XP_005254452 Length = 2188 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISKFLDSQ 9 I KF+D+Q Sbjct: 1999 IKKFIDTQ 2006>XP_005254451 Length = 2214 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ISKFLDSQ 9 I KF+D+Q Sbjct: 2025 IKKFIDTQ 2032>XP_006715771 Length = 419 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ISKFLDS 8 ++KFLDS Sbjct: 48 VAKFLDS 54>XP_006715770 Length = 419 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ISKFLDS 8 ++KFLDS Sbjct: 48 VAKFLDS 54>XP_006715769 Length = 419 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ISKFLDS 8 ++KFLDS Sbjct: 48 VAKFLDS 54>NP_777557 Length = 453 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ISKFLDS 8 ++KFLDS Sbjct: 157 VNKFLDS 163>NP_000431 Length = 860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 ISKFLDS 8 + KFLDS Sbjct: 9 VEKFLDS 15>NP_006436 Length = 2335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SKFLDSQ 9 S+F+DSQ Sbjct: 1377 SEFIDSQ 1383>NP_569733 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 TIS FL+S Sbjct: 562 TISSFLNS 569>NP_904324 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 TIS FL+S Sbjct: 562 TISSFLNS 569>NP_775922 Length = 6996 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 T+SK +DS Sbjct: 4131 TVSKIVDS 4138>XP_006719745 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 TIS FL+S Sbjct: 562 TISSFLNS 569>XP_006719744 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 TIS FL+S Sbjct: 562 TISSFLNS 569>XP_005254044 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TISKFLDS 8 TIS FL+S Sbjct: 562 TISSFLNS 569>NP_061720 Length = 4024 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TISKFLD 7 T+S FLD Sbjct: 872 TVSSFLD 878Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.127 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 440,925 Number of extensions: 735 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |