Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_009052 19 869 NP_001243576 19 869 NP_060469 17 3301 NP_005684 17 4312 NP_001238863 17 4312 NP_001238864 17 4312 NP_001123574 17 4312 XP_006718179 17 4312 XP_005252773 17 4312 XP_005252772 17 4312 XP_005252767 17 4312 XP_005252766 17 4312 XP_006718178 17 4312 XP_006718177 17 4312 XP_005252764 17 4312 XP_005252763 17 4312 XP_006718176 17 4312 XP_006718175 17 4312 XP_005252762 17 4312 NP_573439 16 7355 NP_573438 16 7355 NP_001181930 16 7355 NP_005695 16 7355 XP_006710336 16 7355 XP_006710335 16 7355 XP_006710334 16 7355 XP_006710333 16 7355 XP_006710332 16 7355 NP_056494 15 9605>NP_009052 Length = 461 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TIEIMLLKT 9 TIEIMLL+T Sbjct: 308 TIEIMLLET 316>NP_001243576 Length = 364 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TIEIMLLKT 9 TIEIMLL+T Sbjct: 211 TIEIMLLET 219>NP_060469 Length = 1072 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TIEIMLLKT 9 T+E++LL+T Sbjct: 150 TLEVLLLRT 158>NP_005684 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>NP_001238863 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 301 IEVMLLET 308>NP_001238864 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 301 IEVMLLET 308>NP_001123574 Length = 402 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 250 IEVMLLET 257>XP_006718179 Length = 402 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 250 IEVMLLET 257>XP_005252773 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 161 IEVMLLET 168>XP_005252772 Length = 358 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 206 IEVMLLET 213>XP_005252767 Length = 402 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 250 IEVMLLET 257>XP_005252766 Length = 402 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 250 IEVMLLET 257>XP_006718178 Length = 402 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 250 IEVMLLET 257>XP_006718177 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>XP_005252764 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>XP_005252763 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>XP_006718176 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>XP_006718175 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>XP_005252762 Length = 447 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 IE+MLL+T Sbjct: 295 IEVMLLET 302>NP_573439 Length = 1436 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 1002 IKIMLVKT 1009>NP_573438 Length = 1440 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 1008 IKIMLVKT 1015>NP_001181930 Length = 1433 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 999 IKIMLVKT 1006>NP_005695 Length = 1446 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 1012 IKIMLVKT 1019>XP_006710336 Length = 1177 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 743 IKIMLVKT 750>XP_006710335 Length = 1370 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 936 IKIMLVKT 943>XP_006710334 Length = 1292 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 858 IKIMLVKT 865>XP_006710333 Length = 1439 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 1005 IKIMLVKT 1012>XP_006710332 Length = 1442 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IEIMLLKT 9 I+IML+KT Sbjct: 1008 IKIMLVKT 1015>NP_056494 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TIEIMLLK 8 T+E+ LLK Sbjct: 29 TVELQLLK 36Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.141 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 285,567 Number of extensions: 425 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |