Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 19 869 XP_006718907 19 869 XP_006718906 19 869 XP_005271619 19 869 XP_005271618 19 869 NP_588608 18 1935 NP_115804 17 2528 NP_848509 17 2528 XP_006724772 17 2528 XP_006710459 17 2528 XP_005245803 17 2528 XP_005245802 17 2528 NP_001973 16 7355 NP_001077430 15 9605 NP_775907 15 9605 NP_006280 15 9605 NP_001192 15 9605 XP_003960168 15 9605 XP_005258866 15 9605 XP_005271458 15 9605 XP_005271457 15 9605 XP_006716915 15 9605 XP_005251621 15 9605 XP_006714354 15 9605 XP_934596 15 9605 XP_001722188 15 9605 NP_620143 15 9605>NP_000042 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 HILAALTI Sbjct: 231 HILAALTI 238>XP_006718907 Length = 3050 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 HILAALTI Sbjct: 231 HILAALTI 238>XP_006718906 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 HILAALTI Sbjct: 231 HILAALTI 238>XP_005271619 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 HILAALTI Sbjct: 231 HILAALTI 238>XP_005271618 Length = 3056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 HILAALTI Sbjct: 231 HILAALTI 238>NP_588608 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 TH+LAAL + Sbjct: 81 THLLAALAV 89>NP_115804 Length = 1810 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 THILAALT 8 TH+LAA+T Sbjct: 1686 THMLAAIT 1693>NP_848509 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 TH+LAAL + Sbjct: 77 THLLAALVL 85>XP_006724772 Length = 1605 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 THILAALT 8 TH+LAA+T Sbjct: 1481 THMLAAIT 1488>XP_006710459 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 TH+LAAL + Sbjct: 77 THLLAALVL 85>XP_005245803 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 TH+LAAL + Sbjct: 77 THLLAALVL 85>XP_005245802 Length = 346 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 TH+LAAL + Sbjct: 77 THLLAALVL 85>NP_001973 Length = 1342 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 THILAALTI 9 TH+ ALT+ Sbjct: 640 THLTMALTV 648>NP_001077430 Length = 1523 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 THILAA 6 TH+LAA Sbjct: 1153 THVLAA 1158>NP_775907 Length = 1518 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 THILAA 6 TH+LAA Sbjct: 1148 THVLAA 1153>NP_006280 Length = 2541 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 THILAAL 7 +H+LAAL Sbjct: 1962 SHVLAAL 1968>NP_001192 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 +HI AAL+I Sbjct: 275 SHIRAALSI 283>XP_003960168 Length = 147 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 H+L+A+T+ Sbjct: 26 HMLSAMTV 33>XP_005258866 Length = 1486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 THILAA 6 TH+LAA Sbjct: 1116 THVLAA 1121>XP_005271458 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HILAALTI 9 H LAAL+I Sbjct: 222 HYLAALSI 229>XP_005271457 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HILAALTI 9 H LAAL+I Sbjct: 222 HYLAALSI 229>XP_006716915 Length = 2542 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 THILAAL 7 +H+LAAL Sbjct: 1962 SHVLAAL 1968>XP_005251621 Length = 2542 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 THILAAL 7 +H+LAAL Sbjct: 1962 SHVLAAL 1968>XP_006714354 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 THILAALTI 9 +HI AAL+I Sbjct: 275 SHIRAALSI 283>XP_934596 Length = 147 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 H+L+A+T+ Sbjct: 26 HMLSAMTV 33>XP_001722188 Length = 147 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 HILAALTI 9 H+L+A+T+ Sbjct: 26 HMLSAMTV 33>NP_620143 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HILAALTI 9 H LAAL+I Sbjct: 222 HYLAALSI 229Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.137 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 384,269 Number of extensions: 414 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |