Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 19 665 XP_005248577 19 665 XP_005248576 19 665 NP_000930 16 5631 NP_001030333 16 5631 NP_065826 16 5631 NP_001253977 16 5631 NP_055029 16 7355 NP_001185863 16 7355 NP_258261 16 7355 XP_005249527 16 7355 XP_006715303 16 7355 NP_001098985 15 9605 NP_005836 15 9605 NP_004906 15 9605 NP_997511 15 9605 NP_058198 15 9605 NP_997512 15 9605 NP_997510 15 9605 NP_997057 15 9605 NP_055426 15 9605 NP_004858 15 9605 NP_056046 15 9605 NP_008985 15 9605 NP_001171516 15 9605 NP_001171515 15 9605 NP_079533 15 9605 XP_005254082 15 9605 XP_006719977 15 9605 XP_006715467 15 9605 XP_005271926 15 9605 XP_006714589 15 9605 XP_005271925 15 9605 NP_001135977 15 9605 NP_071452 15 9605>NP_005912 Length = 1512 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TGQRLRIA 8 TGQRLRIA Sbjct: 1380 TGQRLRIA 1387>XP_005248577 Length = 1349 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TGQRLRIA 8 TGQRLRIA Sbjct: 1217 TGQRLRIA 1224>XP_005248576 Length = 1375 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TGQRLRIA 8 TGQRLRIA Sbjct: 1243 TGQRLRIA 1250>NP_000930 Length = 267 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TGQRLR 6 TGQRLR Sbjct: 181 TGQRLR 186>NP_001030333 Length = 267 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TGQRLR 6 TGQRLR Sbjct: 181 TGQRLR 186>NP_065826 Length = 1013 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TGQRLRIAV 9 TG R R+AV Sbjct: 64 TGSRWRVAV 72>NP_001253977 Length = 926 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TGQRLRIAV 9 TG R R+AV Sbjct: 64 TGSRWRVAV 72>NP_055029 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 GQRLRIA 8 GQRLR++ Sbjct: 154 GQRLRVS 160>NP_001185863 Length = 1492 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR RIA+ Sbjct: 729 GQRARIAL 736>NP_258261 Length = 1464 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR RIA+ Sbjct: 701 GQRARIAL 708>XP_005249527 Length = 822 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR RIA+ Sbjct: 729 GQRARIAL 736>XP_006715303 Length = 1463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR RIA+ Sbjct: 729 GQRARIAL 736>NP_001098985 Length = 859 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 G RLR+A+ Sbjct: 163 GMRLRVAM 170>NP_005836 Length = 1325 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 G RLR+A+ Sbjct: 163 GMRLRVAM 170>NP_004906 Length = 678 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 220 GQRKRLAI 227>NP_997511 Length = 644 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 198 GQRKRLAI 205>NP_058198 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 220 GQRKRLAI 227>NP_997512 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 217 GQRKRLAI 224>NP_997510 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 222 GQRKRLAI 229>NP_997057 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 231 GQRKRLAI 238>NP_055426 Length = 5596 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TGQRLRI 7 TG RLR+ Sbjct: 694 TGHRLRV 700>NP_004858 Length = 263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TGQRLRIA 8 TG+ LR+A Sbjct: 35 TGKELRVA 42>NP_056046 Length = 1436 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TGQRLRIA 8 TG +LR+A Sbjct: 340 TGHKLRLA 347>NP_008985 Length = 699 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TGQRLRIA 8 TGQRL+ A Sbjct: 263 TGQRLKEA 270>NP_001171516 Length = 634 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QRLRIAV 9 QR+RIA+ Sbjct: 256 QRIRIAI 262>NP_001171515 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QRLRIAV 9 QR+RIA+ Sbjct: 290 QRIRIAI 296>NP_079533 Length = 710 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QRLRIAV 9 QR+RIA+ Sbjct: 332 QRIRIAI 338>XP_005254082 Length = 1282 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 G RLR+A+ Sbjct: 120 GMRLRVAM 127>XP_006719977 Length = 1295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 G RLR+A+ Sbjct: 163 GMRLRVAM 170>XP_006715467 Length = 5550 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TGQRLRI 7 TG RLR+ Sbjct: 694 TGHRLRV 700>XP_005271926 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TGQRLRIA 8 TGQRL+ A Sbjct: 263 TGQRLKEA 270>XP_006714589 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TGQRLRIA 8 TGQRL+ A Sbjct: 263 TGQRLKEA 270>XP_005271925 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TGQRLRIA 8 TGQRL+ A Sbjct: 263 TGQRLKEA 270>NP_001135977 Length = 646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 204 GQRKRLAI 211>NP_071452 Length = 646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GQRLRIAV 9 GQR R+A+ Sbjct: 204 GQRKRLAI 211Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.143 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 491,595 Number of extensions: 738 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |