Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_073713 20 299 XP_005265476 17 3301 NP_003232 17 3301 NP_056127 16 5631 NP_001241679 16 5631 NP_001269105 16 5631 NP_001269104 16 5631 NP_006716 16 5631 NP_001285 16 5631 XP_006718801 16 5631 XP_006714407 16 5631 XP_006714406 16 5631 XP_005263347 16 5631 XP_005263346 16 5631 XP_005263345 16 5631 XP_005263344 16 5631 XP_005263343 16 5631 XP_005263342 16 5631 XP_005263341 16 5631 XP_005263340 16 5631 XP_005263339 16 5631 NP_066267 16 7355 XP_006717852 16 7355 XP_006717851 16 7355 XP_006717850 16 7355 XP_006717849 16 7355 XP_006717848 16 7355 XP_006717847 16 7355 XP_006717846 16 7355 XP_006717845 16 7355 NP_000128 15 9605 NP_000869 15 9605 NP_000587 15 9605 NP_001277131 15 9605 NP_849191 15 9605 NP_001092105 15 9605 NP_671492 15 9605 NP_001004065 15 9605 NP_001185585 15 9605 NP_036533 15 9605 NP_009134 15 9605 XP_005261968 15 9605 XP_005261966 15 9605 XP_005261967 15 9605 XP_006724476 15 9605 XP_005261965 15 9605 NP_001130034 15 9605>NP_073713 Length = 985 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 TFYNSRQAV 9 TFY+SRQAV Sbjct: 90 TFYDSRQAV 98>XP_005265476 Length = 601 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FYNSRQAV 9 +YN++QAV Sbjct: 173 YYNTKQAV 180>NP_003232 Length = 684 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FYNSRQAV 9 +YN++QAV Sbjct: 256 YYNTKQAV 263>NP_056127 Length = 5005 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>NP_001241679 Length = 601 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TFYNSRQ 7 TFYNS++ Sbjct: 469 TFYNSQR 475>NP_001269105 Length = 567 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FYNSRQAV 9 F+NSRQ++ Sbjct: 279 FWNSRQSL 286>NP_001269104 Length = 655 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FYNSRQAV 9 F+NSRQ++ Sbjct: 367 FWNSRQSL 374>NP_006716 Length = 668 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TFYNSRQ 7 TFYNS++ Sbjct: 501 TFYNSQR 507>NP_001285 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 FYNSRQAV 9 F+NSRQ++ Sbjct: 381 FWNSRQSL 388>XP_006718801 Length = 636 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TFYNSRQ 7 TFYNS++ Sbjct: 469 TFYNSQR 475>XP_006714407 Length = 5004 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_006714406 Length = 3680 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263347 Length = 4640 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263346 Length = 4983 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263345 Length = 4991 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263344 Length = 5005 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263343 Length = 5009 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263342 Length = 5025 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263341 Length = 5026 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263340 Length = 5026 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>XP_005263339 Length = 5026 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 TFYNSR 6 T+YNSR Sbjct: 45 TYYNSR 50>NP_066267 Length = 4377 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3131 TFYTTRQ 3137>XP_006717852 Length = 3508 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 2262 TFYTTRQ 2268>XP_006717851 Length = 3513 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 2267 TFYTTRQ 2273>XP_006717850 Length = 4364 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3118 TFYTTRQ 3124>XP_006717849 Length = 4383 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3137 TFYTTRQ 3143>XP_006717848 Length = 4392 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3146 TFYTTRQ 3152>XP_006717847 Length = 4395 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3149 TFYTTRQ 3155>XP_006717846 Length = 4396 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3150 TFYTTRQ 3156>XP_006717845 Length = 4397 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 TFYNSRQ 7 TFY +RQ Sbjct: 3151 TFYTTRQ 3157>NP_000128 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FYNSRQ 7 FY+SRQ Sbjct: 127 FYSSRQ 132>NP_000869 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 FYNSR 6 FYNSR Sbjct: 37 FYNSR 41>NP_000587 Length = 259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 FYNSRQ 7 FY+SRQ Sbjct: 211 FYHSRQ 216>NP_001277131 Length = 869 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 FYNSR 6 FYNSR Sbjct: 778 FYNSR 782>NP_849191 Length = 994 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 FYNSR 6 FYNSR Sbjct: 903 FYNSR 907>NP_001092105 Length = 993 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 FYNSR 6 FYNSR Sbjct: 903 FYNSR 907>NP_671492 Length = 1090 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NSRQAV 9 NSRQAV Sbjct: 566 NSRQAV 571>NP_001004065 Length = 948 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NSRQAV 9 NSRQAV Sbjct: 424 NSRQAV 429>NP_001185585 Length = 961 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NSRQAV 9 NSRQAV Sbjct: 424 NSRQAV 429>NP_036533 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FYNSRQAV 9 FY+ RQA+ Sbjct: 612 FYDCRQAM 619>NP_009134 Length = 1103 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NSRQAV 9 NSRQAV Sbjct: 566 NSRQAV 571>XP_005261968 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FYNSRQAV 9 FY+ RQA+ Sbjct: 612 FYDCRQAM 619>XP_005261966 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FYNSRQAV 9 FY+ RQA+ Sbjct: 612 FYDCRQAM 619>XP_005261967 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FYNSRQAV 9 FY+ RQA+ Sbjct: 612 FYDCRQAM 619>XP_006724476 Length = 1838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FYNSRQAV 9 FY+ RQA+ Sbjct: 612 FYDCRQAM 619>XP_005261965 Length = 1920 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FYNSRQAV 9 FY+ RQA+ Sbjct: 694 FYDCRQAM 701>NP_001130034 Length = 859 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 NSRQAV 9 NSRQAV Sbjct: 335 NSRQAV 340Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.125 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 452,738 Number of extensions: 370 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |