Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_036367 17 3301 XP_005265029 17 3301 XP_005265028 17 3301 XP_005265027 17 3301 XP_005265026 17 3301 XP_005265025 17 3301 XP_005265024 17 3301 XP_006713097 17 3301 NP_001171940 16 5631 NP_689512 16 5631 NP_054777 16 5631 XP_005261969 16 5631 NP_000072 16 7355 XP_005273087 16 7355 XP_006711794 16 7355 XP_005273086 16 7355 XP_005273085 16 7355 XP_005273084 16 7355 NP_036603 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TELSQRLV 8 TELSQRLV Sbjct: 1819 TELSQRLV 1826>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TELSQRLV 8 TELSQRLV Sbjct: 1819 TELSQRLV 1826>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TELSQRLV 8 TELSQRLV Sbjct: 1772 TELSQRLV 1779>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TELSQRLV 8 TELSQRLV Sbjct: 1851 TELSQRLV 1858>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 TELSQRLV 8 TELSQRLV Sbjct: 1851 TELSQRLV 1858>NP_036367 Length = 1279 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 513 TRLAQRLIM 521>XP_005265029 Length = 886 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 121 TRLAQRLIM 129>XP_005265028 Length = 887 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 121 TRLAQRLIM 129>XP_005265027 Length = 887 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 121 TRLAQRLIM 129>XP_005265026 Length = 1023 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 258 TRLAQRLIM 266>XP_005265025 Length = 1024 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 258 TRLAQRLIM 266>XP_005265024 Length = 1278 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 513 TRLAQRLIM 521>XP_006713097 Length = 1279 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 TELSQRLVM 9 T L+QRL+M Sbjct: 513 TRLAQRLIM 521>NP_001171940 Length = 606 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TELSQR+ Sbjct: 490 TELSQRI 496>NP_689512 Length = 605 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TELSQR+ Sbjct: 489 TELSQRI 495>NP_054777 Length = 423 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TE+SQRL Sbjct: 77 TEMSQRL 83>XP_005261969 Length = 579 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TELSQR+ Sbjct: 463 TELSQRI 469>NP_000072 Length = 3801 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TEL+QRL Sbjct: 2637 TELAQRL 2643>XP_005273087 Length = 2788 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TEL+QRL Sbjct: 2637 TELAQRL 2643>XP_006711794 Length = 3022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TEL+QRL Sbjct: 1858 TELAQRL 1864>XP_005273086 Length = 3264 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TEL+QRL Sbjct: 2637 TELAQRL 2643>XP_005273085 Length = 3755 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TEL+QRL Sbjct: 2591 TELAQRL 2597>XP_005273084 Length = 3801 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TELSQRL 7 TEL+QRL Sbjct: 2637 TELAQRL 2643>NP_036603 Length = 973 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TELSQR 6 TELSQR Sbjct: 775 TELSQR 780Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.127 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 297,145 Number of extensions: 420 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |