Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1482 NP_671714 18 1482 XP_006715890 18 1482 XP_005250160 18 1482 XP_005250159 18 1482 NP_055270 16 7355 NP_085143 16 7355 NP_001258635 16 7355 NP_060016 16 7355 NP_005014 16 7355 NP_055796 16 7355 XP_006719218 16 7355 XP_005251390 16 7355 XP_005251389 16 7355 XP_005272080 16 7355 XP_005272077 16 7355 XP_005273009 16 7355 NP_001191439 15 9605 NP_001077083 15 9605 XP_006721083 15 9605>NP_005742 Length = 3907 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELMGKLEV 9 TELM KLEV Sbjct: 939 TELMEKLEV 947>NP_671714 Length = 3899 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELMGKLEV 9 TELM KLEV Sbjct: 939 TELMEKLEV 947>XP_006715890 Length = 3860 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELMGKLEV 9 TELM KLEV Sbjct: 939 TELMEKLEV 947>XP_005250160 Length = 3939 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELMGKLEV 9 TELM KLEV Sbjct: 939 TELMEKLEV 947>XP_005250159 Length = 3952 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELMGKLEV 9 TELM KLEV Sbjct: 939 TELMEKLEV 947>NP_055270 Length = 304 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TELMGKLE 8 T+L+G+LE Sbjct: 190 TQLLGQLE 197>NP_085143 Length = 665 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TELMGKLE 8 T L+GKLE Sbjct: 105 TVLLGKLE 112>NP_001258635 Length = 233 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ELMGKLE 8 ELMGK++ Sbjct: 216 ELMGKID 222>NP_060016 Length = 510 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TELMGKLE 8 T+L+G+LE Sbjct: 344 TQLLGELE 351>NP_005014 Length = 377 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LMGKLE 8 LMGKLE Sbjct: 232 LMGKLE 237>NP_055796 Length = 1946 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ELMGKLEV 9 EL+G LE+ Sbjct: 756 ELLGSLEI 763>XP_006719218 Length = 665 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 TELMGKLE 8 T L+GKLE Sbjct: 105 TVLLGKLE 112>XP_005251390 Length = 168 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ELMGKLE 8 ELMGK++ Sbjct: 151 ELMGKID 157>XP_005251389 Length = 239 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ELMGKLE 8 ELMGK++ Sbjct: 222 ELMGKID 228>XP_005272080 Length = 258 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LMGKLE 8 LMGKLE Sbjct: 109 LMGKLE 114>XP_005272077 Length = 428 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LMGKLE 8 LMGKLE Sbjct: 279 LMGKLE 284>XP_005273009 Length = 271 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 TELMGKLE 8 T+L+G+LE Sbjct: 157 TQLLGQLE 164>NP_001191439 Length = 347 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 TELMGKL 7 T+L+GKL Sbjct: 329 TDLLGKL 335>NP_001077083 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ELMGKLEV 9 +L+GKL+V Sbjct: 371 QLVGKLQV 378>XP_006721083 Length = 534 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ELMGKLEV 9 +L+GKL+V Sbjct: 371 QLVGKLQV 378Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.133 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 459,117 Number of extensions: 910 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |