Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_001273897 16 7355 NP_005345 16 7355 NP_055704 16 7355 NP_001229236 16 7355 NP_001229238 16 7355 XP_006717425 16 7355 XP_005252402 16 7355 NP_000362 15 9605 NP_001389 15 9605 XP_005258667 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELAFTASD 9 TELA TASD Sbjct: 915 TELALTASD 923>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TELAFTASD 9 TELA TASD Sbjct: 915 TELALTASD 923>NP_001273897 Length = 304 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TELAFTAS 8 TELA TAS Sbjct: 265 TELASTAS 272>NP_005345 Length = 347 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 TELAFTAS 8 TELA TAS Sbjct: 308 TELASTAS 315>NP_055704 Length = 1037 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AFTASD 9 AFTASD Sbjct: 137 AFTASD 142>NP_001229236 Length = 1038 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AFTASD 9 AFTASD Sbjct: 137 AFTASD 142>NP_001229238 Length = 939 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AFTASD 9 AFTASD Sbjct: 105 AFTASD 110>XP_006717425 Length = 867 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AFTASD 9 AFTASD Sbjct: 137 AFTASD 142>XP_005252402 Length = 971 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AFTASD 9 AFTASD Sbjct: 137 AFTASD 142>NP_000362 Length = 147 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ELAFTASD 9 E+ FTA+D Sbjct: 112 EVVFTAND 119>NP_001389 Length = 328 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ELAFTA 7 ELAFTA Sbjct: 224 ELAFTA 229>XP_005258667 Length = 197 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ELAFTA 7 ELAFTA Sbjct: 93 ELAFTA 98Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.115 0.288 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 299,594 Number of extensions: 231 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |