Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_000192 17 3301 NP_001011645 17 4312 NP_000035 17 4312 NP_891548 16 7355 NP_001129627 16 7355 NP_001129626 16 7355 NP_001231118 16 7355 NP_001231121 16 7355 NP_055564 16 7355 NP_001231119 16 7355 NP_001231120 16 7355 NP_001231122 16 7355 NP_001278320 16 7355 NP_001230361 16 7355 NP_001230357 16 7355 XP_005259931 16 7355 XP_005259930 16 7355 XP_006720406 16 7355 XP_006720405 16 7355 XP_006720404 16 7355 XP_006720403 16 7355 XP_006720402 16 7355 XP_006720401 16 7355 XP_006720400 16 7355 XP_006720399 16 7355 NP_078966 15 9605 NP_006807 15 9605 NP_055319 15 9605 NP_001273990 15 9605 NP_001273991 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TDESTQRVT 9 TDES QRVT Sbjct: 871 TDESAQRVT 879>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TDESTQRVT 9 TDES QRVT Sbjct: 666 TDESAQRVT 674>NP_000192 Length = 532 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DESTQRVT 9 DE TQR+T Sbjct: 282 DEGTQRLT 289>NP_001011645 Length = 388 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TDESTQRVT 9 T+E+TQ++T Sbjct: 121 TEETTQKLT 129>NP_000035 Length = 920 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 TDESTQRVT 9 T+E+TQ++T Sbjct: 653 TEETTQKLT 661>NP_891548 Length = 479 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ESTQRVT 9 E+TQR+T Sbjct: 239 EATQRIT 245>NP_001129627 Length = 387 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ESTQRVT 9 E+TQR+T Sbjct: 147 EATQRIT 153>NP_001129626 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ESTQRVT 9 E+TQR+T Sbjct: 246 EATQRIT 252>NP_001231118 Length = 1644 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 270 TDKHLQRVT 278>NP_001231121 Length = 1504 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 173 TDKHLQRVT 181>NP_055564 Length = 1472 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>NP_001231119 Length = 1533 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 202 TDKHLQRVT 210>NP_001231120 Length = 1463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 132 TDKHLQRVT 140>NP_001231122 Length = 1347 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 77 TDKHLQRVT 85>NP_001278320 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ESTQRVT 9 E+TQR+T Sbjct: 246 EATQRIT 252>NP_001230361 Length = 317 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ESTQRVT 9 E+TQR+T Sbjct: 246 EATQRIT 252>NP_001230357 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ESTQRVT 9 E+TQR+T Sbjct: 246 EATQRIT 252>XP_005259931 Length = 716 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDESTQRV 8 TD ST+R+ Sbjct: 569 TDSSTRRI 576>XP_005259930 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDESTQRV 8 TD ST+R+ Sbjct: 571 TDSSTRRI 578>XP_006720406 Length = 1591 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720405 Length = 1347 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720404 Length = 1477 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720403 Length = 1486 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720402 Length = 1487 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720401 Length = 1504 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720400 Length = 1526 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>XP_006720399 Length = 1548 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDESTQRVT 9 TD+ QRVT Sbjct: 217 TDKHLQRVT 225>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STQRVT 9 STQRVT Sbjct: 1172 STQRVT 1177>NP_006807 Length = 356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 DESTQRV 8 DE+T+RV Sbjct: 167 DETTERV 173>NP_055319 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDESTQRVT 9 T+E T++VT Sbjct: 91 TNEKTRKVT 99>NP_001273990 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDESTQRVT 9 T+E T++VT Sbjct: 105 TNEKTRKVT 113>NP_001273991 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDESTQRVT 9 T+E T++VT Sbjct: 91 TNEKTRKVT 99Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.104 0.247 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 485,519 Number of extensions: 903 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |