Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 19 869 XP_006715292 19 869 NP_004045 16 5631 XP_005248043 16 5631 XP_006713958 16 5631 NP_065824 16 5631 NP_001106832 16 5631 NP_001129074 16 7355 NP_001073279 16 7355 NP_000395 16 7355 NP_055616 16 7355 NP_003250 16 7355 XP_005259159 16 7355 XP_006711879 16 7355 XP_005273329 16 7355 NP_065913 16 7355 NP_787050 15 9605 NP_940820 15 9605 NP_001028776 15 9605 NP_001028777 15 9605 NP_055266 15 9605 NP_443078 15 9605 NP_056381 15 9605 XP_006721993 15 9605 XP_006719863 15 9605 XP_005266390 15 9605 XP_006719862 15 9605 XP_005266389 15 9605 XP_005249758 15 9605 XP_006715751 15 9605 XP_005249757 15 9605 XP_006715750 15 9605 XP_005248537 15 9605 XP_005248536 15 9605 NP_057085 15 9605>NP_115927 Length = 1321 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TDA LSTST Sbjct: 315 TDALLSTST 323>XP_006715292 Length = 759 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TDA LSTST Sbjct: 302 TDALLSTST 310>NP_004045 Length = 482 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 TDAFLST 7 +DAFLST Sbjct: 286 SDAFLST 292>XP_005248043 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD LSTST Sbjct: 2 TDGKLSTST 10>XP_006713958 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD LSTST Sbjct: 2 TDGKLSTST 10>NP_065824 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD LSTST Sbjct: 2 TDGKLSTST 10>NP_001106832 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD LSTST Sbjct: 2 TDGKLSTST 10>NP_001129074 Length = 546 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TDAFLS 6 TDAFLS Sbjct: 118 TDAFLS 123>NP_001073279 Length = 647 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TDAFLS 6 TDAFLS Sbjct: 219 TDAFLS 224>NP_000395 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 TDAFLS 6 TDAFLS Sbjct: 249 TDAFLS 254>NP_055616 Length = 2137 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD FLS S+ Sbjct: 537 TDVFLSKSS 545>NP_003250 Length = 924 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DAFLSTST 9 DAF++T+T Sbjct: 280 DAFVATAT 287>XP_005259159 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 DAFLST 7 DAFLST Sbjct: 158 DAFLST 163>XP_006711879 Length = 1364 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD FLS S+ Sbjct: 537 TDVFLSKSS 545>XP_005273329 Length = 1934 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 TD FLS S+ Sbjct: 334 TDVFLSKSS 342>NP_065913 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 DAFLST 7 DAFLST Sbjct: 158 DAFLST 163>NP_787050 Length = 887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDAFLSTS 8 TD++ STS Sbjct: 158 TDSYFSTS 165>NP_940820 Length = 887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>NP_001028776 Length = 852 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>NP_001028777 Length = 882 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>NP_055266 Length = 847 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>NP_443078 Length = 766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 +DAFL+ +T Sbjct: 609 SDAFLAANT 617>NP_056381 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 DAFLSTS 8 DAF STS Sbjct: 310 DAFASTS 316>XP_006721993 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 T F+STST Sbjct: 238 TGNFISTST 246>XP_006719863 Length = 656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDAFLSTS 8 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_005266390 Length = 833 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDAFLSTS 8 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_006719862 Length = 848 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDAFLSTS 8 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_005266389 Length = 886 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 TDAFLSTS 8 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_005249758 Length = 712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>XP_006715751 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 99 TDSFLTVSS 107>XP_005249757 Length = 886 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>XP_006715750 Length = 887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 TDAFLSTST 9 TD+FL+ S+ Sbjct: 190 TDSFLTVSS 198>XP_005248537 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 DAFLSTS 8 DAF STS Sbjct: 310 DAFASTS 316>XP_005248536 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 DAFLSTS 8 DAF STS Sbjct: 372 DAFASTS 378>NP_057085 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 TDAFLSTST 9 T F+STST Sbjct: 221 TGNFISTST 229Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.110 0.274 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 363,062 Number of extensions: 636 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |